Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01186 ATGAACCATTCTGCAACTCTCAAACACCAGTGCGTGGCTTCCCTCAAAACCCTAACGCCCCACATCACCTGTCTGGCGGTCCACCGTAACCTCCTCTACGCTGCATCCCTAAACCTCATCAACGTCTTCGACATCTCCCATTACTCCCACATCGACGCCTTCAACCAAAGCCCTGCCTCAGGTTTTGTCAAGTCCATCGCCTTCACCAACTCAAGGGTCTTCACCGCTCACCAAGACCGCAAGATTCGCGTCTGGCTCATCACCCCCTCCAAACGACATCGTCTCCTCTCCTCACTCCCCACCGTCACCGACCGTCTCCGTCGCTGCATCGTTCCGCAAAACTACGTCAGCGTGCGCCGCCACAAGACCAGGCTCTGGATCCAACATTGCGACACAGTCTCCGGTTTAGCCGTCAACCAGAGGCTCATGTATTCGGTTTCGTGGGATAAGAGCTTTAAGGTCTGGGACTTATTCAGTTTCCGGTGTTTGGAGTCCGTCAAAGCGCATGAGGACGCGATCAACGCTGTGGTCGTTAACAGTGATGGCACCGTATACACGGCGTCCGCGGATGGGAGCATCAAGGTTTGGAGAAGGGACTGCGAGGCGAAACGGCACGCGTTGGTGAGCACCATTGGGAGGCAGAAGTCGACAGTTAATGCGCTTGCGTTGGACGGCGGTGGCGCAGGGTTGTTTTCCGGTGGTTGCGACGGCGCGATATGCCGGTGGGAGTGGGGGTGTGAGGAAAACGGCGTGGTGGAGACGGAGACATTGAGTGGTCACAGTGGGGCCATACTGTGTCTGATCCACGTGGCGGGTTTGTTGGCGAGTGCATCAGCGGATCTAACGGTTAGGATCTGGCAACGGGAGAGAGGGAGGAGTGGGTATAATTGCAAGGCGGTGTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTGGCATTTCCGGAAGGTGAAGACGACTCAAACGGCGTCGTTAGGCTATTCAGTGGAAGCCTAGACGGGGAGATTAAAGTGTGGGAGGTGTTTGGTTCGGCTTGA 1038 0.5626 MNHSATLKHQCVASLKTLTPHITCLAVHRNLLYAASLNLINVFDISHYSHIDAFNQSPASGFVKSIAFTNSRVFTAHQDRKIRVWLITPSKRHRLLSSLPTVTDRLRRCIVPQNYVSVRRHKTRLWIQHCDTVSGLAVNQRLMYSVSWDKSFKVWDLFSFRCLESVKAHEDAINAVVVNSDGTVYTASADGSIKVWRRDCEAKRHALVSTIGRQKSTVNALALDGGGAGLFSGGCDGAICRWEWGCEENGVVETETLSGHSGAILCLIHVAGLLASASADLTVRIWQRERGRSGYNCKAVLEGHEKPVKSLVAFPEGEDDSNGVVRLFSGSLDGEIKVWEVFGSA* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01186 345 ProSitePatterns Trp-Asp (WD) repeats signature. 327 341 IPR019775 -
Lapu3g01186 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 296 IPR001680 GO:0005515
Lapu3g01186 345 SUPERFAMILY WD40 repeat-like 10 340 IPR036322 GO:0005515
Lapu3g01186 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 345 - -
Lapu3g01186 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 196 - -
Lapu3g01186 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 196 IPR001680 GO:0005515
Lapu3g01186 345 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 341 IPR045182 -
Lapu3g01186 345 FunFam BnaA09g28200D protein 116 201 - -
Lapu3g01186 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 345 IPR001680 GO:0005515
Lapu3g01186 345 SMART WD40_4 250 287 IPR001680 GO:0005515
Lapu3g01186 345 SMART WD40_4 204 243 IPR001680 GO:0005515
Lapu3g01186 345 SMART WD40_4 47 86 IPR001680 GO:0005515
Lapu3g01186 345 SMART WD40_4 294 340 IPR001680 GO:0005515
Lapu3g01186 345 SMART WD40_4 8 44 IPR001680 GO:0005515
Lapu3g01186 345 SMART WD40_4 119 156 IPR001680 GO:0005515
Lapu3g01186 345 SMART WD40_4 159 197 IPR001680 GO:0005515
Lapu3g01186 345 Gene3D - 113 344 IPR015943 GO:0005515
Lapu3g01186 345 Gene3D - 5 106 IPR015943 GO:0005515
Lapu3g01186 345 Pfam WD domain, G-beta repeat 161 196 IPR001680 GO:0005515
Lapu3g01186 345 Pfam WD domain, G-beta repeat 296 339 IPR001680 GO:0005515
Lapu3g01186 345 Pfam WD domain, G-beta repeat 256 286 IPR001680 GO:0005515
Lapu3g01186 345 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Lapu3g01186 345 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Lapu3g01186 345 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01186 Lapu-Chr3 12777928 12779007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01186 158 340 Acyl Lipid Metabolism Gene Families AT3G18860 27.513 3.90e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01186 - - aprc:113874855 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01186 3 12777928 12779007 Lapu3g01186 3 12777928 12779007 ECH