Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01165 ATGTATCGTTTGAAGGTAATTTTTGCTGCTAATCTCAGATTCCTCAAGTCGCCACGCGCCAGGGGGTTCATTGGAACTCGGTCTATCCAACTCACTCAGAACCAGGTGAGTCATTTCTCTATCGACAATCCATCCCCCCTTTTGAGCCATTCTTACCATTTCCCCTTTCCCAACATTCATCGGAAGCTCTACTTTTCTTCGAAACCAAATCCCGTTGTCGAGCTTATTTTGACCAGCGATTGGTCCAAGGGTTTAGAGAACGAGTTAGAAAAATGCTACCCATCCCTGACCCATGAAACTGTTGTTTACGTTTTGAAGCGGTTGGAAGCAAACCCTGAAAAAGCATGGTGCTTTTTCGATTGGGTCAGTACGAAAAAATGGTTTAGAGCGAGTTCGTCGCTATATGGCTTAATTCTTAGGGTCTTGGCCACTGAGAAGACGATAAGACAATTTTGGATTACTCTGTGGACTATGAAGAGAAAGGGGTTTTATTTTGAAGAAGAGATGTATTTTCCAATTTTAGCTCGTTTTAAAAGGAAAAAGATGGACAAGGATTGGTCGTCTCTTATCCACTTCTATAATCGGAGTATCCGAGAAAATGCAATGCAAAGGGTTGTTACCAATGTGGTTGGCATCATTTCAGTGTCTAAATGGGATGATGGTGTTAAGGGTGAACTTGCAAAGGTTAAAATTCAGCTGTCGGATAATTTTGTAATAAGGGTTTTGAGAGAGCTTCGAAAGACTCCTTTAAAGGCTTACGAGTTCTTTCGTTGGGTTGGGAGCCAATCTGGTTATGAACATAATACAATGACTTATAATGCATTTGCAAGAGTTCTGGCGAGGACAGATTCAATTGGGAAGTTTTGGAGTGTCATTGAGGAGATGAAGAGTGTGGGTCATGAATTGGATATTGATACTTACTTAAAGATATCAAGGATGCTTCAAAAGAATATGATGATGGAAGATGCCGTCAAGCTTTATGAGATTATGATGGATAGTTCATATAAGCCATCAGTTGAGGATTGCAGCTTTCTTTTGAAAAGTATTTATGAAAGTGATAAGCCAAATTTGGATTTAGTTTTCAGGGTTTCTAAGAAATACGAGTCAACAGAGCACAGTCTCCCCAAGGTAATCTATGATGGAATCCACAGGTCTTTGACAAGTGCTGGGAAACTTGACGAAGCTGAGAATATTGTTAATAGTATGAGAAATGCTGGTTATGAACCTGATAACATCACATATGGTCAAATGATTGTTGGATTTTGTAAGATGAGGAGGTTTGAAGAAGCATGTAAAGTGCTGGAGGAGATGGAGTCTTGTGGTTGCATCCCTGATGCTAAGACTTGGACCCTGTTGGTCCAAGGACATTGTGATGCGAATGAAGTAGACATGGCATTACTTTGTTTACTTAAGATGATTGAAAAGGGCTGCAATCTGGATGCTGCTGTTTTAGGTGTTCTGACAGACAGTTTTCTTGGTCAAGAGCGAATAGATGATGCATACAAATTGCTTGTAGAGGTTGTTACCCAACATGGTGCATCTCCGTCATACACTACATATAAGAAACTAATTGTAAATCTATTGGAAATTGAGAAATTTGAGGAAGCCCTTAACCTTCTTCGTTTGACTAGAAAACACCAACACACACCAATTATTGAACCCTTTCTGCAGTATATTTCTAATTTTGGGTCTGTTGAAGATGCTCTAAGATTCCTGAAGAGTAAGGGAAGCCCCCGGTCGAATGTGATCTACCTTCGAGTTTTTAAATCTTTAATTGGAAAAGGTAGACTTTCTGACGCCAAAGATCTACTGAACAGGATACCCTCAGGTATAAGTAAACGTAAAGATATCTGTGAACTCTTCAATTCAATGGAGAATTACTACACCCATTTCGGCGTCACAATGAACCGCGTGAAAGCAATAGCTGCTTCTCTCAGAGTGCTTGAGTCTTCATCACTCGCTACCCGAGTTCTGGTGACTCGGAACCAGGTGACTCACTTCTCTCTCCATAATCCACTACCCCGTTTGGATTCGTCTCACTATTTACAATTTCCCATCACTCACCCTAAACTCTATTTTTCTACCAAGCCGAGCTCTATCGTGGAGCTTGTTTTAACCAACGATTGGTCCCAAGCATTAGAGCTCAGGTTAGACAATAGTTGCCCATCAATGACCCATGAAACCGTTATTTACGTCATAAAGCGGTTGGATAAAAACCCTGAAAAAGCTTCGAGCTTTTTCAATTGGGTCTTTAAGAAAGACTGGTTTAGGGCAAGCTCTTCAGTGTTTAGCTTAATTGTTAGGATCTTGGCCACCAAGGATACTATGAAGCAATTTTGGATTACTTTAAGGATGATGAAGGAAAATGGGTTTTATCTCAACGAAGAAACATATCTCACAATTCATGCTGGCTTTAAAAGGGAAAAGATGAACAGTGACTCCGTTGCTTTGACCCACTTCTATAATCGGATGCTAGAGGATAATGCAATGCAAAGTGTTGTCACCAAGGTGGTTGGCATCATTTCATTGTCTGAATGGGGTGAGGAGGTTACGGGTGAACTTGCAAAGCTTAAAATTCAGCTGTCGGATAATTTTGTAATAAGGGTTTTGAAAGAGCTTCGGAACACTCCTCTAAAGTCTTGCAAGTTCTTTTATTGGGTTGGGACACAACCTGGTTATGAGCATAATACAGTGACTTACAATGCAGTTGCAAGTGTTCTTGCGAGGAATGACTCAATTCAGGAGTTTTGGGGTGTTATTAAGGAGATGAAGAGTGTGGGTCATGAATTGGATATTGATACTTACATAAAGATATCGAGGCAGCTTCAAAAGAATAGGATGTTGGAGGATGCTGTCAAGCTTTATGAGCTTATGATGGATGGTTCATATAAGCCATTGGTTCAGGATTGCAGTCTCCTTTTGAAGAGCATCTCCACAAGTGATAAGCCAAATTTGGATTTAGTTTTCAGGGTTGCTATGAAATATGAGTCGACAGGGCACACTCTCTCCAAGGCGATCTATGATGGAATCCACAGGTCTTTGACAGGTGCTGGGAAATTTGATGAAGCTGAAAATATTGTTAGGACTATGAGAAATGCTGGTCATGAGCCTGATAACATCACCTATAGTCAATTGGTTTTTGGACTTTGCAAGATGAGGAGGTTTGAGGAAGCATGTAAAGTGCTGGAGGAGATGGAATCTTGTGGATGTATCCCTGATATCAAGACTTGGACCATCTTGATCCAAGGGCATTGTGATGCCAATCAATTAGATAAAGCGTTACTTTGTTTTTCTAAGATGATTGAAAAGGACTGCAATCCGGATGCTGATTTATTGGATGTTCTGGTTGAGGGTTTTCTTAGTCAAAAGAGAATACAAGGTGCGTACGCGTTGTTTATAGAGATTGGTAAGAAGTGTCGTATATCTCCATGGCAAGCTACATATAAAAAGCTGATTGAAAAGCTATTAGGAGTCTTGAAGTTTGAGGAAGCACTTGAACTTCTTCGTTTGATGAAGACCCACAACTACCCTCCATACCATCTACCCTTTGTGCCTTACATTTCAAAGTTTGGGTCTGTGAATGATGCTGAGGCATTCCTGAAGGCATTGAGTGTAAAAAGTTATCCATCCCATGTTGTCTATGTTCAGGTTTTTGAATCCTTATTCCGGGAGGGTAGACTCTCCGAGGCCAAAGATCTATTGTACAAGACTCCTCACCATATCCGTACACATAGTAAAATCTCTAAACTTTTTGGTTCATCTGTAAGTGACACTCAGACTCAGCTGCTGCCTGATCCCTAG 3801 0.4062 MYRLKVIFAANLRFLKSPRARGFIGTRSIQLTQNQVSHFSIDNPSPLLSHSYHFPFPNIHRKLYFSSKPNPVVELILTSDWSKGLENELEKCYPSLTHETVVYVLKRLEANPEKAWCFFDWVSTKKWFRASSSLYGLILRVLATEKTIRQFWITLWTMKRKGFYFEEEMYFPILARFKRKKMDKDWSSLIHFYNRSIRENAMQRVVTNVVGIISVSKWDDGVKGELAKVKIQLSDNFVIRVLRELRKTPLKAYEFFRWVGSQSGYEHNTMTYNAFARVLARTDSIGKFWSVIEEMKSVGHELDIDTYLKISRMLQKNMMMEDAVKLYEIMMDSSYKPSVEDCSFLLKSIYESDKPNLDLVFRVSKKYESTEHSLPKVIYDGIHRSLTSAGKLDEAENIVNSMRNAGYEPDNITYGQMIVGFCKMRRFEEACKVLEEMESCGCIPDAKTWTLLVQGHCDANEVDMALLCLLKMIEKGCNLDAAVLGVLTDSFLGQERIDDAYKLLVEVVTQHGASPSYTTYKKLIVNLLEIEKFEEALNLLRLTRKHQHTPIIEPFLQYISNFGSVEDALRFLKSKGSPRSNVIYLRVFKSLIGKGRLSDAKDLLNRIPSGISKRKDICELFNSMENYYTHFGVTMNRVKAIAASLRVLESSSLATRVLVTRNQVTHFSLHNPLPRLDSSHYLQFPITHPKLYFSTKPSSIVELVLTNDWSQALELRLDNSCPSMTHETVIYVIKRLDKNPEKASSFFNWVFKKDWFRASSSVFSLIVRILATKDTMKQFWITLRMMKENGFYLNEETYLTIHAGFKREKMNSDSVALTHFYNRMLEDNAMQSVVTKVVGIISLSEWGEEVTGELAKLKIQLSDNFVIRVLKELRNTPLKSCKFFYWVGTQPGYEHNTVTYNAVASVLARNDSIQEFWGVIKEMKSVGHELDIDTYIKISRQLQKNRMLEDAVKLYELMMDGSYKPLVQDCSLLLKSISTSDKPNLDLVFRVAMKYESTGHTLSKAIYDGIHRSLTGAGKFDEAENIVRTMRNAGHEPDNITYSQLVFGLCKMRRFEEACKVLEEMESCGCIPDIKTWTILIQGHCDANQLDKALLCFSKMIEKDCNPDADLLDVLVEGFLSQKRIQGAYALFIEIGKKCRISPWQATYKKLIEKLLGVLKFEEALELLRLMKTHNYPPYHLPFVPYISKFGSVNDAEAFLKALSVKSYPSHVVYVQVFESLFREGRLSEAKDLLYKTPHHIRTHSKISKLFGSSVSDTQTQLLPDP* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01165 1266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1073 1107 IPR002885 -
Lapu3g01165 1266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1003 1037 IPR002885 -
Lapu3g01165 1266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Lapu3g01165 1266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Lapu3g01165 1266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 931 965 IPR002885 -
Lapu3g01165 1266 NCBIfam pentatricopeptide repeat 1040 1074 IPR002885 -
Lapu3g01165 1266 NCBIfam pentatricopeptide repeat 412 446 IPR002885 -
Lapu3g01165 1266 NCBIfam pentatricopeptide repeat 448 480 IPR002885 -
Lapu3g01165 1266 NCBIfam pentatricopeptide repeat 1076 1109 IPR002885 -
Lapu3g01165 1266 NCBIfam pentatricopeptide repeat 898 931 IPR002885 -
Lapu3g01165 1266 Pfam PPR repeat 898 927 IPR002885 -
Lapu3g01165 1266 Pfam PPR repeat 378 406 IPR002885 -
Lapu3g01165 1266 PANTHER OS01G0970900 PROTEIN 704 1253 IPR044578 GO:0008380
Lapu3g01165 1266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1038 1072 IPR002885 -
Lapu3g01165 1266 Gene3D Tetratricopeptide repeat domain 372 521 IPR011990 GO:0005515
Lapu3g01165 1266 Gene3D Tetratricopeptide repeat domain 856 1013 IPR011990 GO:0005515
Lapu3g01165 1266 Gene3D Tetratricopeptide repeat domain 1014 1141 IPR011990 GO:0005515
Lapu3g01165 1266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 896 930 IPR002885 -
Lapu3g01165 1266 Pfam PPR repeat family 413 457 IPR002885 -
Lapu3g01165 1266 Pfam PPR repeat family 1048 1085 IPR002885 -
Lapu3g01165 1266 Gene3D Tetratricopeptide repeat domain 700 855 IPR011990 GO:0005515
Lapu3g01165 1266 Gene3D Tetratricopeptide repeat domain 226 362 IPR011990 GO:0005515
Lapu3g01165 1266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Lapu3g01165 1266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01165 Lapu-Chr3 12571968 12581052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01165 294 626 Miscellaneous Gene Families AT4G11690 25.000 3.05e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01165 - - gmx:100815857 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01165 3 12571968 12581052 Lapu3g01165 3 12571968 12581052 ECH