Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01162 ATGGAGTCTGCTCTAGTGATCAAGGTGAAATATGGAGATACCCTCAGGCGCTTCAATGCCCGTGTGGATGAGATTAATGGTCGGCTGGATCTCGATATGGTTGGGTTGAGACAGAAGATATGTTCTATCTTCAGTTTCAGTGCTGATGCAAATTTAATTCTGAGATATGTTGATGAAGATGGCGACTTGGTGACTCTAGTTGACGATGATGATTTGCATGATGTGATGAGGCAGAAATTAAAATTCTTGAGAATTGAGGTAGTTATAAACAATGAAGGCAGTGCTAGATCAAATGCTTGGTCTGGTGGAAGTACCACCCCTTTAAAGTCTCCTTCTGTCACAAACCCGCCTGTGGGTAGAAATGCTATATTACACGAGGCTCTTTCTAAATTGTCACTTTCGAAAGCAGCATCTTCAACTCCTGTGGTAGATAATCTTGCCAATTCAATTTTAAGAATGGGACAATCTGTTCTAAATTCTCATTTCCAGGCTCGTGATGCAGCTGGTACAAGTTCGAAAACTGGTGTTCCTAAAGAACCTGTCACTTCTAAAGCAAAAGATTCTCAATCTTCATACGTGGACTCAACCTCCAATTCTACTGTCCATAGCGAGAGTGCCACCCCTTTAAGATTTCCTGTTCAAAACCCATTTTTGAGCGGAAATGCAGATAAAGTTGACATTTCATCTTCTGTGCCTGAGCCAGTACGTGGGCTTATTTCCAATTTATTTCCTAATGCTGCATCTTCTAGTCAGCTATCTGTTAATCTTGCTGATTTAATTTCCCTAGTGGGAAACTCTGTTCTAAATTCTTATTGTCAGCCTCATGTTGCAACTGGTCCATTCTCTAAAACTGGTGTTCCTGAAGAGCCTATCACTGGTGAAGCAAGAGGTCTACAGATGCCATCTGTAGACTTGGCTTCCAATGCCACTCAACAGGTGGAGGCTGAAAACGTAATTAGAGATGTAGCCTCTGCTTCCAATGCCAATCCACGTTGTGAAGCAAGAGGTCTACAGTTACCATCTGTAGATATGGCTTCTAATGCCACTCAACAGGTGGAGACTGAAAATGTAATTAGAGATGTAGCCTCTGCCTCCAGTGCCAGTCAACAGGTGGAAGCTGGGAATGTAATCAGTGCAACAACAGCTGCAGAAGTTGCAACTGTTGATCTCAATATCCCTCCATGTGATACCTATTCATCTCAGTCCACAAATGTAAATAAGGCTCCACTTTCAACAGAAGAAGTCCCTGATGATGATGGCAGGAAGGGTAAAATGTCGACTATGTATAGTTCTGCTGGTAAGGGTGAGAGTAGTGGTGCATCCTCAAGTCTTGCTGGTCCTAATAACAGTTCAACCCAGACTACTTCTTTGAGTGCTGGTGCTTTCTTTGACTGTCCCTTTTCTGGGACATACATTAATTCTTGGACACCACATGTTGGAAACTCTCAAATGCCCCCGTTTAAAAGGAGCCATCCTCACACTGAGGCAATGACTGGTATGTTCCACAAAGGTGTCCGCTGTGATGGTTGTGGGGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTAAGGGAAAATTATGATCTCTGCCACATTTGTTTTAATGAAATGGGTAATGGGACAGATTATATCAGAATGGACCGCCCTGCCTCTGCTCGTTTCCCTCGATGTCCAACATTACCACCACATACTTTTAAGAGAAGTGCCATTCTGAAGCATGCAAGGCCAAAGCTAGACAGTCGGTTCATTTTGGATGTCAATGTGATAGACGGTACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGGATGCGCAATAATGGCAATATAGTGTGGCCCAAGGGAACTCAACTTGTTTGGATTGGAGGAGACAAGTTTAGTGACTCTTATTCTGTTGACTTAGAGGTTCAGGATGGTGTCCCTGCGGAGAAGGAACTTGACATTGCAGTTGATTTTAAAGCACCTCAGATACCTGGTCGATACATATCATACTGGAGGTTGGCAACTTCATCTGGACAAAAATTTGGCCAACGTGTTTGGGTCCTTATACAGGTTGATGCCTCTCTCAAGGACTCATTTTATGATAACTCTCAAGGACTGAACTTGAATATTCCCCTCGATGTCAGTGGCTCTGAAGGACCTCTGCTTATAGATATCAATGTTCGGCCTGCCGAGGATGATACTTTTCTTCAAACCAGCATTCCTAATGCTCCGATTGAACCTGCGAAACAGGTTGATGAGGAACCAAGGTTGGAACTGGAAAAGGAATTCCCTATAAATGAAGCTACATTTGTTGGCCCTGTTGCCTCAGCCCCCGCTGCAATCTCCGTGGCACCTTCATCAGTTTCTTATCCTATTATTGATTTATCTGAAACCAACCCAGCTGTTCCCCCTAATCAGCAATCCTCCACTGTGGATGTACCATCATCATCTGTTGTAACTGGTGGAATTAACTCTCTGGAGGAGAATCTACTTAAAGAACTTGAGGAGATGGGTTTTAAGCAGGTTGATTTGAACAAAGAGATCTTGAGGATGAATGAGTACGATCTGGAGCAATCCGTAGACGATCTATGTAGTGTTGATGTCTATGGTATTTCTGAGTGGGGCCCTATCCTTGAAGAGTTACAAGAGATGGGTTTCCATGACAGAGAGATGAATAAGAGGTTGCTTAAGAAAAACAATGGAAGCATAAAGCGTGTTGTTATGGATTTAATCCAAGGAGAGTAG 2736 0.4309 MESALVIKVKYGDTLRRFNARVDEINGRLDLDMVGLRQKICSIFSFSADANLILRYVDEDGDLVTLVDDDDLHDVMRQKLKFLRIEVVINNEGSARSNAWSGGSTTPLKSPSVTNPPVGRNAILHEALSKLSLSKAASSTPVVDNLANSILRMGQSVLNSHFQARDAAGTSSKTGVPKEPVTSKAKDSQSSYVDSTSNSTVHSESATPLRFPVQNPFLSGNADKVDISSSVPEPVRGLISNLFPNAASSSQLSVNLADLISLVGNSVLNSYCQPHVATGPFSKTGVPEEPITGEARGLQMPSVDLASNATQQVEAENVIRDVASASNANPRCEARGLQLPSVDMASNATQQVETENVIRDVASASSASQQVEAGNVISATTAAEVATVDLNIPPCDTYSSQSTNVNKAPLSTEEVPDDDGRKGKMSTMYSSAGKGESSGASSSLAGPNNSSTQTTSLSAGAFFDCPFSGTYINSWTPHVGNSQMPPFKRSHPHTEAMTGMFHKGVRCDGCGVYPITGPRFKSKVRENYDLCHICFNEMGNGTDYIRMDRPASARFPRCPTLPPHTFKRSAILKHARPKLDSRFILDVNVIDGTMMAPSTAFTKIWRMRNNGNIVWPKGTQLVWIGGDKFSDSYSVDLEVQDGVPAEKELDIAVDFKAPQIPGRYISYWRLATSSGQKFGQRVWVLIQVDASLKDSFYDNSQGLNLNIPLDVSGSEGPLLIDINVRPAEDDTFLQTSIPNAPIEPAKQVDEEPRLELEKEFPINEATFVGPVASAPAAISVAPSSVSYPIIDLSETNPAVPPNQQSSTVDVPSSSVVTGGINSLEENLLKELEEMGFKQVDLNKEILRMNEYDLEQSVDDLCSVDVYGISEWGPILEELQEMGFHDREMNKRLLKKNNGSIKRVVMDLIQGE* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01162 911 Gene3D - 868 911 - -
Lapu3g01162 911 MobiDBLite consensus disorder prediction 430 453 - -
Lapu3g01162 911 Gene3D Immunoglobulins 574 692 IPR013783 -
Lapu3g01162 911 MobiDBLite consensus disorder prediction 164 207 - -
Lapu3g01162 911 SUPERFAMILY RING/U-box 496 553 - -
Lapu3g01162 911 CDD NBR1_like 577 689 IPR032350 -
Lapu3g01162 911 FunFam protein NBR1 homolog 870 911 - -
Lapu3g01162 911 FunFam next to BRCA1 gene 1 protein-like 574 693 - -
Lapu3g01162 911 Pfam PB1 domain 6 87 IPR000270 GO:0005515
Lapu3g01162 911 SMART zz_5 501 546 IPR000433 GO:0008270
Lapu3g01162 911 MobiDBLite consensus disorder prediction 398 453 - -
Lapu3g01162 911 SMART PB1_new 4 90 IPR000270 GO:0005515
Lapu3g01162 911 Gene3D - 819 864 - -
Lapu3g01162 911 Pfam Zinc finger, ZZ type 502 537 IPR000433 GO:0008270
Lapu3g01162 911 Gene3D - 1 88 - -
Lapu3g01162 911 Pfam Ig-like domain from next to BRCA1 gene 588 688 IPR032350 -
Lapu3g01162 911 Gene3D - 494 550 IPR043145 -
Lapu3g01162 911 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 822 863 IPR015940 -
Lapu3g01162 911 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 329 910 - -
Lapu3g01162 911 SUPERFAMILY CAD & PB1 domains 4 78 - -
Lapu3g01162 911 MobiDBLite consensus disorder prediction 96 117 - -
Lapu3g01162 911 SUPERFAMILY UBA-like 871 909 IPR009060 GO:0005515
Lapu3g01162 911 CDD UBA_NBR1 870 908 - -
Lapu3g01162 911 ProSiteProfiles Zinc finger ZZ-type profile. 502 552 IPR000433 GO:0008270
Lapu3g01162 911 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 867 910 IPR015940 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01162 K17987 - gmx:100778692 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01162 3 12559653 12564541 Lapu3g01162 3 12559653 12564541 ECH