Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01161 ATGGATCCCCACCCAGGAACCTTCCCCATTCTCTCCTACGTCATGTCCCGTCTCCCTTCCTTCGGCCCCAGATCCCCCACCGCCACCACCTCCGCCACCGCCTCCACTTCCCGTTCCCATCACGTCGACATCGAACAACCACCTCCCTCCGACCCTTCCTCTTCCTCCATCGTCTGCAAAATGCCCAATCTCGCCGACCCCGCAATGCTGGCCTCCATGACCAGCGCCATCTCCGACGTCGCCCAGGCCCGATCCGTCTTCAAGGTCATGGGGCCCCGGCCCACCCACGAGGAGGTCGACGAGGCCAAGGCCAAGCTGGCGGACCTCGAAGCCCACCTGTCCCGCCAACTGGAAGAGATCGTGGGCATGCCCAGGCCCCCCGAGATCGACGAGGCCCACTGGGTTGCCCACCTCGCGGAGAAGGAGAAGGGCATCAAGGATTCCGCGGAGAAAGAGAAGCGCATTTTTAAGTCCATCATTCAGCTCGACAACATGCACGACGCCTACGGGAAGCTCCTCAAGGACGCCGAGAAGCGCTTGGTCAAGATTTACGAGGACAACGGCGCCGACGACGAGAACGACGAGAACGACGACGACAATGAAGTCAAAGAAGTGAAAGAACAGGTTGAGGGGATTTTGCAAGAGGCCTACGGAAAAGGGATGGAGCGAATCGCTCTCTCCGGGAAGCGCCTCAAGTTCCTGCCTGAAGCATTTGGCCACATTCCTGCATTGGTCATCCTCGACGTCTCCACCAATCAACTTTCGTTCATTCCTGATTCCATATGTGGATTGGAAAATCTCGAGGAGCTTAATATCTCTTCCAATGCTTTGGAGTCGCTGCCAGATTCGATTGGCTTGTTGCAGAAGTTGAAAGTCCTCAATGTGTCCGGAAACAAGCTGTGTGCTCTTCCTGATTCCATTAGTAAGTGCAGTTCATTGGTGGAGCTAGATGCAAGCTTTAACAGCCTGTCGTATTTGCCAACAAACATTGGATATGAGTTGCGTAATTTACAGAAGCTTATGATTCAGTTGAACAAGATTCGATCTCTTCCCTCATCTGTTTGCGAAATGAAATCCTTGCGCTATCTGGATGCTCACTTTAACGAGCTGCGCGGGCTTCCTATGGCGATTGGGAAATTGACTAGTCTTCAAGTTCTTAACCTGAGCAGTAACTTCAGTGACCTTAGAGAACTTCCAGAGACATTTGGTGATTTGATTAACCTCAGAGAATTGGATATCAGCAACAACCAAATTCATGCACTTCCTGATTCTTTTGGTCGCCTTCATAACTTGACCAAGCTAAACATGGATCAGAATCCTCTTGAAGTGCCACCTTTGGATATTGTGGATCAAGGGGTCCAAGCCGTAAAGAGCTTCATGTCTCAGAGATGGATTGATATATTGGCGGAGGAAGAAAGAAAAACCACCCAGGAATTGCAAGAACAAGGAGATAATGGGTGGTTAACGCGAAGCACCTCTTGGCTGAAGAATGTTTCTGAAAATGTAACTGAGATGATTATGTCTCCCAGAACTCCCAAAGAAGCGTATCTTAATCAGCAGCTATGA 1566 0.5102 MDPHPGTFPILSYVMSRLPSFGPRSPTATTSATASTSRSHHVDIEQPPPSDPSSSSIVCKMPNLADPAMLASMTSAISDVAQARSVFKVMGPRPTHEEVDEAKAKLADLEAHLSRQLEEIVGMPRPPEIDEAHWVAHLAEKEKGIKDSAEKEKRIFKSIIQLDNMHDAYGKLLKDAEKRLVKIYEDNGADDENDENDDDNEVKEVKEQVEGILQEAYGKGMERIALSGKRLKFLPEAFGHIPALVILDVSTNQLSFIPDSICGLENLEELNISSNALESLPDSIGLLQKLKVLNVSGNKLCALPDSISKCSSLVELDASFNSLSYLPTNIGYELRNLQKLMIQLNKIRSLPSSVCEMKSLRYLDAHFNELRGLPMAIGKLTSLQVLNLSSNFSDLRELPETFGDLINLRELDISNNQIHALPDSFGRLHNLTKLNMDQNPLEVPPLDIVDQGVQAVKSFMSQRWIDILAEEERKTTQELQEQGDNGWLTRSTSWLKNVSENVTEMIMSPRTPKEAYLNQQL* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01161 521 MobiDBLite consensus disorder prediction 22 56 - -
Lapu3g01161 521 SUPERFAMILY L domain-like 218 446 - -
Lapu3g01161 521 MobiDBLite consensus disorder prediction 19 56 - -
Lapu3g01161 521 Gene3D Ribonuclease Inhibitor 198 471 IPR032675 -
Lapu3g01161 521 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Lapu3g01161 521 Pfam Leucine rich repeat 266 323 IPR001611 GO:0005515
Lapu3g01161 521 Pfam Leucine rich repeat 399 441 IPR001611 GO:0005515
Lapu3g01161 521 Pfam Leucine rich repeat 335 391 IPR001611 GO:0005515
Lapu3g01161 521 ProSiteProfiles Leucine-rich repeat profile. 407 428 IPR001611 GO:0005515
Lapu3g01161 521 FunFam Plant intracellular Ras-group-related LRR protein 2 329 504 - -
Lapu3g01161 521 SMART LRR_bac_2 380 401 - -
Lapu3g01161 521 SMART LRR_bac_2 241 260 - -
Lapu3g01161 521 SMART LRR_bac_2 334 353 - -
Lapu3g01161 521 SMART LRR_bac_2 310 329 - -
Lapu3g01161 521 SMART LRR_bac_2 357 376 - -
Lapu3g01161 521 SMART LRR_bac_2 287 306 - -
Lapu3g01161 521 SMART LRR_bac_2 405 424 - -
Lapu3g01161 521 SMART LRR_bac_2 264 283 - -
Lapu3g01161 521 FunFam Plant intracellular Ras-group-related LRR protein 9 141 325 - -
Lapu3g01161 521 Coils Coil 99 119 - -
Lapu3g01161 521 PANTHER LEUCINE-RICH REPEAT-CONTAINING 333 441 - -
Lapu3g01161 521 SMART LRR_typ_2 311 333 IPR003591 -
Lapu3g01161 521 SMART LRR_typ_2 334 357 IPR003591 -
Lapu3g01161 521 SMART LRR_typ_2 428 451 IPR003591 -
Lapu3g01161 521 SMART LRR_typ_2 405 427 IPR003591 -
Lapu3g01161 521 SMART LRR_typ_2 287 310 IPR003591 -
Lapu3g01161 521 SMART LRR_typ_2 380 404 IPR003591 -
Lapu3g01161 521 SMART LRR_typ_2 264 286 IPR003591 -
Lapu3g01161 521 SMART LRR_typ_2 241 263 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01161 Lapu-Chr3 12544795 12546945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01161 234 480 Receptor kinase-like Gene Family AT5G56040 29.605 1.41e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01161 - - vun:114179436 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01161 3 12544795 12546945 Lapu3g01161 3 12544795 12546945 ECH