Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01152 ATGGGTATGATGGAAGAGGAGAGTAGCAATAGCAACATAGAAGGTGGAGCTTCGCTGCCATCGTCAGGTTCAGACGCTAAGAAGCGAAGAGTCACGTACTTTTACGAACCAACTATCGGCGATTACTACTACGGCCAGGGCCACCCAATGAAGCCGCACCGCATCCGCATGGCGCACAACCTCATCGTTCACTACTCCCTCCACCGCCGCATGGAGATTAACCGCCCTTTCCCCGCCTCCCCCAACGACATTCGCCGCTTTCACTCCGACGACTACGTCCACTTCCTCTCATCCGTCTCCCCCGAGACCCTCGCCGACACCACCTTCTCGCGCCAACTCAAGCGCTTCAACGTCGGCGAGGACTGCCCTGTCTTCGACGGCCTTTTCGACTTCTGCCAGGCCTCCGCTGGCGGCTCCATCGGCGCCGCCGTCAAACTCAACCGCAGCGACGCTGACATCGCCATCAATTGGGCCGGCGGTCTCCACCATGCCAAGAAGTCCGAAGCCTCTGGATTCTGCTACGTCAACGACATTGTCCTCGGTATCCTCGAGCTTCTCAAAGTTCACAGGCGTGTTCTGTATGTTGACATTGATGTTCACCATGGTGATGGAGTTGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTCTCTTTTCACAAGTTTGGGGACTTTTTCCCTGGCACAGGGCACATCAAAGACATTGGGGTGGGTTCAGGAAAGAATTATGCTGTCAATGTTCCATTAAACGACGGAATGGATGATGACAATTTTCGTGGTCTGTTTCGAACTGTCATTCATAAAGTCATGGAGGTTTATCAACCTGAGGCAGTTGTTCTTCAATGCGGAGCTGATTCATTGTCTGGTGACAGGTTGGGCTGCTTCAACTTGTCTGTGAAAGGTCATGCGGATTGCCTTCGATTCCTTAGATCTTTCAATGTTCCTTTAATGGTTTTGGGTGGGGGTGGTTATACAATTCGGAATGTTGCCCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTGGGAGTGGAGCCTGACAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGTCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTGAACACACCCAAGGATATGGAAAAAATAAGGATCACACTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGTACCTTTTCAGACAACACCACCTACCTTACAAATGCCAGAAGAGGCTGAAGAGGACATGGATAGAAGACCAAAACTTCGCAAATGGGATGGTGAAGATTATGATTCTGACCCTGATGAAGGTGGAAAGGCTAATTCCATGTTCTCAAATGTCACTGCCCATACGAGGGACATTGCAGATGACATGGAAGAAGAGAAGCCAGGAGTGCATCCATCTTGTTGTTGA 1425 0.4975 MGMMEEESSNSNIEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASPNDIRRFHSDDYVHFLSSVSPETLADTTFSRQLKRFNVGEDCPVFDGLFDFCQASAGGSIGAAVKLNRSDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKNYAVNVPLNDGMDDDNFRGLFRTVIHKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKIRITLLEQISRLPHAPSVPFQTTPPTLQMPEEAEEDMDRRPKLRKWDGEDYDSDPDEGGKANSMFSNVTAHTRDIADDMEEEKPGVHPSCC* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01152 474 SUPERFAMILY Arginase/deacetylase 29 393 IPR023696 -
Lapu3g01152 474 PIRSF HDAC_I_euk 10 470 IPR003084 GO:0004407|GO:0016575
Lapu3g01152 474 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Lapu3g01152 474 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Lapu3g01152 474 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Lapu3g01152 474 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
Lapu3g01152 474 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Lapu3g01152 474 PRINTS Histone deacetylase signature 50 67 IPR003084 GO:0004407|GO:0016575
Lapu3g01152 474 PRINTS Histone deacetylase signature 83 101 IPR003084 GO:0004407|GO:0016575
Lapu3g01152 474 MobiDBLite consensus disorder prediction 1 19 - -
Lapu3g01152 474 MobiDBLite consensus disorder prediction 398 450 - -
Lapu3g01152 474 FunFam Histone deacetylase 27 406 - -
Lapu3g01152 474 Gene3D Histone deacetylase domain 27 402 IPR037138 -
Lapu3g01152 474 PANTHER HISTONE DEACETYLASE 2-RELATED 13 352 - -
Lapu3g01152 474 Pfam Histone deacetylase domain 48 339 IPR023801 -
Lapu3g01152 474 CDD HDAC_classI 34 341 - -
Lapu3g01152 474 MobiDBLite consensus disorder prediction 415 440 - -
Lapu3g01152 474 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Lapu3g01152 474 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Lapu3g01152 474 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Lapu3g01152 474 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01152 Lapu-Chr3 12450909 12454283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01152 K06067 - gmx:100807923 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01152 3 12450909 12454283 Lapu3g01152 3 12450909 12454283 ECH