Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01148 ATGAAGGCAACACTACGGTACTTAGCAGGCATGGCTGGCCCAAGTGGTTTCGGCTCAAATTCAACAGCTGAGCAAGTCACTGAAGATTTATCTTCCTTGCTCCCTTCAAATCTAACCGCTCTCATCACTGGAGCGACTTCTGGAATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAGAGAGGCATAAGGGTTGTGATTGGTGCGAGGGACTTGAGAAAGGCGAGGGAAGTGAGAGAGAAAATCAGAAAGGAGAATCCTCATGCTGAGATTATTCTGTTGGAGATCGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGCTCAGAGTTTCTAGCTTTAGAATTGCCCCTGAATATTCTCATAAACAATGCAGGAATGTACTCTCAAAACTTGGAGTTCTCCGAAGAGAAAATTGAAATGACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACGAAAATGCTACTAGAGAAAATGATAGATACTGCAAAGAAGTCAGGCATTGAAGGAAGAATAATAAACGTCTCTTCTGTGATTCATAGCTGGGTGAAAAGATCTGCTTTTTGCTTCAACGACATGCTCTGCGGAAAAAATTATAATGGCACACGCGCATATGCTCAGTCAAAATTGGCAACAATTCTGCATGTGAAGGAAGTGGCTAGACAACTGAAGGAAAGGAATGCAAATGTAACAATTAACGCAGTGCATCCAGGAATTGTGAAGACGGGAATTATAAGAGCGCATAAGGGCTTAATAACGGATTCCCTGTTTTTCATTGCATCAAAGTTACTGAAATCGATATCACAGGGAGCATCAACGACATGTTATGTGGCGCTAAGTGCAAAAACCGATGGAGTGAGTGGAAAATATTTTACTGATTGTAACGAAAGTAACTGCTCAAGTTTAGCAAACGAGGAACCAGAAGCTAAAAAGCTATGGAATGATACCAATGCATTGCTTCACAAACGGTTACGTCAAGCAACAGATTGA 993 0.4089 MKATLRYLAGMAGPSGFGSNSTAEQVTEDLSSLLPSNLTALITGATSGIGAETARVLAKRGIRVVIGARDLRKAREVREKIRKENPHAEIILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSAFCFNDMLCGKNYNGTRAYAQSKLATILHVKEVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSAKTDGVSGKYFTDCNESNCSSLANEEPEAKKLWNDTNALLHKRLRQATD* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01148 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Lapu3g01148 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Lapu3g01148 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Lapu3g01148 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Lapu3g01148 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Lapu3g01148 330 PANTHER RETINOL DEHYDROGENASE 14 319 - -
Lapu3g01148 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 298 IPR036291 -
Lapu3g01148 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Lapu3g01148 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Lapu3g01148 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Lapu3g01148 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Lapu3g01148 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Lapu3g01148 330 Gene3D - 30 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01148 Lapu-Chr3 12367176 12369953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01148 19 248 Acyl Lipid Metabolism Gene Families AT1G63380 28.151 9.63e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01148 - - gmx:100776567 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01148 3 12367176 12369953 Lapu3g01148 3 12367176 12369953 ECH