Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01143 ATGCCATCAACAGGGAGGGATCACAGGATTGCTCGCAGAATGGCAAGCTTTCCTCGAAGCATAATGGAGGGTATTTCAAGGGCAATGGAGGATGGTATAGGCTTTATAGGAAGAGGAAGAGGAAGAAGAAGAAATCAACATGCAAATTTTCCTTTACAGCCTCAGGAACATGTTCCGCAACCACTTGATCAAGTAGTGGTTCAAGAGGAATGGAGTTTTCTAGAGAGTTTTGAGCAGCAATATGGCACCAAACACCCTTTCTTTTATGCTTGCCGTCTCGGGGAAGCCATGAAGTTAGCAGAACAAGATCACAAATTCTTGTTCATGTACCTCCACTCGCCTGACCACCCTTTTGCAAATGTTTTCTGCAAGGAAACACTGTGTTCGGAGCCAGTGATTCAGTTTCTTGATGTGAATTTTGTTTGCTGGGGAGGGCTTGCATATAGAGGAGAGGGCTTGCAAATGGTTGCAACGCTAAGCCCTGACACCTTTCCCTGTTGTGCTGTCATAGCCCCTGCGCCTGGTGAGAGCATTGCAGTTCTGCAACAGCTAGAAGGACCCCTTTCACCGGCTGAGCTAGTGGGGATTCTACAAAGAACATTGGAAGAACAAGGGGTGGCTTTCGGAAGTGCTAAAGCTGAGCAGGAAGAAAAGATTCGAGCAGACCGTAGGCTCAGAGAAGAACAAGATGCTGCATATCTTGCAGCTTTGCAAATTGACAAGGAAAAAGAGAAATTAAATAATTTACCTTCAAGAGAGAGAGTTCAGAAGCAAGTGGAAGCTCACAACACCAAAAATCATGGGAAACTGATGAACAATTCTATTAATGCCACTAAACAGAATAGCAGATTGAATGAGTCCACAAAGGGAGTTGCTAGTAAAGGAATCGAGTCTCAACCCACTCAGATACTCATAAGGTTTCCAAACGGGGAAAGAAGAGAGCATACTTTCCTTTGCACAGACAAAATCCAATCCATTTTCTCATACATCGATTCATTAGGATTGCCAGGGATCGGAAACTACAGATTGATATCAAACTTCCCAAGAAGAGCTTATGGTGTTGATCAAATGAGAATGACTCTCAAAGAGGCGGGCTTGTATCCTAAAGCTAGTGTATTCCTGGAGCCTTTAGGAGCTAGAGTCCCATAA 1149 0.4421 MPSTGRDHRIARRMASFPRSIMEGISRAMEDGIGFIGRGRGRRRNQHANFPLQPQEHVPQPLDQVVVQEEWSFLESFEQQYGTKHPFFYACRLGEAMKLAEQDHKFLFMYLHSPDHPFANVFCKETLCSEPVIQFLDVNFVCWGGLAYRGEGLQMVATLSPDTFPCCAVIAPAPGESIAVLQQLEGPLSPAELVGILQRTLEEQGVAFGSAKAEQEEKIRADRRLREEQDAAYLAALQIDKEKEKLNNLPSRERVQKQVEAHNTKNHGKLMNNSINATKQNSRLNESTKGVASKGIESQPTQILIRFPNGERREHTFLCTDKIQSIFSYIDSLGLPGIGNYRLISNFPRRAYGVDQMRMTLKEAGLYPKASVFLEPLGARVP* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01143 382 Gene3D Glutaredoxin 64 206 - -
Lapu3g01143 382 PANTHER FAS-ASSOCIATED PROTEIN 9 375 - -
Lapu3g01143 382 SMART 45neu3 72 198 IPR006577 -
Lapu3g01143 382 SUPERFAMILY Ubiquitin-like 246 377 IPR029071 -
Lapu3g01143 382 SMART ubx_3 293 376 IPR001012 GO:0005515
Lapu3g01143 382 ProSiteProfiles UBX domain profile. 296 374 IPR001012 GO:0005515
Lapu3g01143 382 CDD UAS 93 203 - -
Lapu3g01143 382 Pfam UBX domain 298 375 IPR001012 GO:0005515
Lapu3g01143 382 SUPERFAMILY Thioredoxin-like 68 206 IPR036249 -
Lapu3g01143 382 CDD UBX 303 375 - -
Lapu3g01143 382 Gene3D - 296 376 - -
Lapu3g01143 382 Coils Coil 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01143 Lapu-Chr3 12302114 12304341 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01143 K18726 - gmx:100775212 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01143 3 12302114 12304341 Lapu3g01143 3 12302114 12304341 ECH