Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01130 ATGCAATCGTTATCGTTGAGTATGAGTCTGAGTCTGAGTAGTAGTAGTAGTAGTTCAGCGAATTTACTGTTGCTGGGTTCGGAGGGGAGAGTGAGAAGAAGCAGAAGTGTGATCGTAGCGTGTGCTTCGGAGGGAGACAGTGGTAGCAGTAGCACCAGCTCCTTTCTCTCTCGGACCCAAACCTACGCTCTTCTTAAGCAACAGTTGCAAGTAGCTGCTAAATCTGAGGATTACAAGGAAGCAGCTAGAATTCGAGATTCGTTAAAGTTGTTCGAGGACGAGGAGCCTGTGTTGCGTCTCAGGAGACTTTTGAAGGAAGCAATTGCGGAAGAGAGATTCCAGGATGCTGCTAGTTATCGTGATGAGCTAAACAAAATAGCCCCATACTCTCTTTTAAAATGTTTCAGTGATGCTACAACATTGGGAATCAGGGTTCAAGTTAGGAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGGGTTATACTTCTTTGCATATAGAATAAGAATTACCAATAATTCAGACCTCCCTGTACAACTTCTTAGAAGACATTGGATTATAACTGATGCGAATGGGAAGACCGAAAATGTCTGGGGAATTGGAGTTGTTGGTGAACAGCCGTTGATACTTCCTGGGAATAGTTTTGAATACTCTTCAGCATGCCCACTGAGCACACCAAATGGTAGAATGGAAGGTGACTATGAAATGATCCATGTTGAAAGAGTAGGCTCACGATCATTCAATGTGGCCATCGCCCCGTTTTCTCTCTCTCTTCTTGGAGATGATGACGGTTGTAATCTTTGA 807 0.4387 MQSLSLSMSLSLSSSSSSSANLLLLGSEGRVRRSRSVIVACASEGDSGSSSTSSFLSRTQTYALLKQQLQVAAKSEDYKEAARIRDSLKLFEDEEPVLRLRRLLKEAIAEERFQDAASYRDELNKIAPYSLLKCFSDATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDLPVQLLRRHWIITDANGKTENVWGIGVVGEQPLILPGNSFEYSSACPLSTPNGRMEGDYEMIHVERVGSRSFNVAIAPFSLSLLGDDDGCNL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01130 268 Pfam ApaG domain 155 238 IPR007474 -
Lapu3g01130 268 Pfam UvrB/uvrC motif 99 126 IPR001943 GO:0005515
Lapu3g01130 268 Pfam UvrB/uvrC motif 65 92 IPR001943 GO:0005515
Lapu3g01130 268 ProSiteProfiles UVR domain profile. 59 94 IPR001943 GO:0005515
Lapu3g01130 268 ProSiteProfiles ApaG domain profile. 137 264 IPR007474 -
Lapu3g01130 268 ProSiteProfiles UVR domain profile. 94 129 IPR001943 GO:0005515
Lapu3g01130 268 PANTHER OS05G0170800 PROTEIN 42 263 - -
Lapu3g01130 268 Gene3D ApaG domain 133 262 IPR036767 -
Lapu3g01130 268 SUPERFAMILY ApaG-like 139 258 IPR036767 -
Lapu3g01130 268 Hamap Protein ApaG [apaG]. 136 267 IPR023065 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01130 Lapu-Chr3 12186378 12193817 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01130 - K06195 gmx:100782176 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01130 3 12186378 12193817 Lapu3g01130 3 12186378 12193817 ECH