Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01102 ATGGGGACGGCAACAAAACCTCTTTCGCACACTGTTAGCGTCTTCAATATACCTCGCTCCGCCACTGCCAAGGACCTCCTCCATTTCCTTCAATCTAAGGTGGGTCCTTCCACCGTCTTCGCCCTCGAAATCTTCTCCGACAACGCCAACTGGAAGTCTCGTGGCGCCGGCCGCGTCCAGTTCGAGACCCTCGATGCCAAGTCCCGCGCCCTCTCTCTCTCCCACCTGCAACAACTACTCATTAACTCCCACTTCCTCCGCCTCTCCGATATCTCCGAAGACATCATCTTCCGCCCCCTCCACCGCCTCCAAAACGGAGTCCTCTACGCCGGATTCATGCTCTCCGACAACCGCATGAGCGTCCTCGGCTCCTGGGAGGGCGTCGCAGGCTTGGTCGTGCCCCAAAGGAGGAAGCTTGACTTCTTGGTGTGGCATGGTGATGACTGTTACCGACTCGAAATTCTTTTTGAGGATATTTTGGAGTCTCATGGCTATTGTTTGGGTGAAGAAACCAAACTCAATGCCCTCCTCTTGAAGCTTAAATTTGGGCCAAGGATTTATAAGAAAAAGACGGGGCCAGATGTGGCGACCACGTTTAGGAGTGATAGATACCATTTTTGTAAGGAGGATTCTGAGTTTCTTTGGGTGCGAACTACTGACTTTTCGGCTCTGAAGTCAATTGGGCATTCTACTTCATTTTGTTGGGAAATTGAGGAAGAACTTTTGGCTTCGGATGTTTTTTCATGTTTCCCGCTCTACAAGGAAAATTTTAGAGATTTGGCTCTGGAGGATGGGGAAGAATTCTGTTCTTCCACGGAAGCAGTTCCTCTTGTAAAGTGTGCGTCGCAATCCAAGTTACCTTACGAGGCCCTTTTCCAGCTGAATTCTCTTGTTCATACTCAGAAAATTAGTCTTGCTTCGGTGGATGATGAATTGATCGACTTGTTGGTAGGCTTAGATGAAGAAAGTAGAGCAGTGATTTTTCAGAAATTGCACCAGATGGGCTTCACTTGTTATGAGCCTCTTAAATTTGTGAAGACTCAGTTGCATGTGCTTAGTAACAAGAAAAGAAATCCGCCACAATCTTCACAGAAAAGGTTGATACATAATAACATTATGAGCTGTCATAGAGCCTTGATTACCCCAACGAAGATTTATTGCCTTGGTCCTGAGCTTGAAACGTCAAACCATGTGGTAAAGCACTTTGCATCCCATGCTTCAGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAAATTATGCTGTATCAACTGGTGTGCAAAAGGGAATCTTTTCAAAGCCTTTTAAAACTGAAATATATAATCGGATATTGACTATTCTTCGAGATGGGATTGTAATTGGATCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATGTGAAAGCAACAGATATCAGAGAATGGATGGGATGCTTCAACAATATTCGCAGTGTTTCTAAATGTGCAGCGAGGATGGGACAGTTGTTCAGTTCTTCCATACAAACTTTTGAAGTGCCCCCTCAAGATGTGGAACTAATTCCAGATATTGAAGTTACCTATGATGGTGTAAGCTACTGTTTCTCGGATGGTATTGGAAAAATTTCCCAATCTTTTGCTAGGCAAGTTGCTCAAAAGCTCAAGTTAGATCATAGTCCTTCAGCATTTCAAATTCGGTTTGGAGGATATAAAGGTGTCATAACTGTTGATCGCCAGTCCTTTAGGAAGTTATCATTGCGGAACAGCATGCTTAAGTTTGAATCCAAAAATAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGTTTTCTCAATCGAGAGATTATATCCCTGCTGTCTACCTTAGGAGTAAAAGATGAGGCATTTTTGGCAAGGCAACAGGACCAGTTGAATTTATTAGGAAGGATGTTAACTGATAGTAAGGCAGCTTTGGATGTTTTAGAAAGTTTGAACGGAGCTGATTCAAGGAGCATTTTAGTGAAGATGTTGCATGAATTTAATGAGCCAAACAGTGAGCCTTACCTATCAATGATGCTTAAGGCTTACTATGCAAACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGACGAGTCTTAGTTGGTTGCTTGGATGAAACTGGTCTTTTGAATTATGGACAAGTATTTGTTCGTATAACAGTGAAAAAAACTATGGAAAAGTTTGATGATAACCTAAGGAAAGTGGATGATGATGATAGCACACGTATAATAGTGGGAAAGGTGGTGGTCACAAAAAATCCTTGTCTTCACCCAGGAGATGTAAGAGTCCTTGATGCTATCTACAATGAAGAATTAGAGGAAAAGGGTTTGAGGGATTGCCTTGTATTTCCACAAAATGGGCATAGGCCCCATCCAAATGAATGCTCTGGAGGTGATCTTGATGGAGATTTGTTTTTCATAAGCTGGGACGAAGATCTAATCCCATATCAAACTGAGGCTCCAATGGACTACACAGGACGTAGACCTCGTATAATGGACCACAAGGTGACCCTAGAGGAAATCCAACAATTTTTCGTGGATTACATGATCAATGATACTTTGGGTGCTATCTCCACCGCACATCTAGTTCACGCTGACCGTGAACGAGATAAGGCCAAGAGTAGAAAATGTCTGGAGTTAGCAGAGCTTCACTCCATGGCTGTTGACTTTGCAAAGACCGGAGCACCTGCTGCAATGCCTAGAGTTTTGAAACCGAAAGAGTTTCCAGATTTCATGGAGAGGGTGGACCACCCTATGTACATCTCCAATGGGGTACTAGGAAAACTTTATCGCGCCATAATTGAATCTCAACTGCAAATAAAATATAGTTTTGTGTGGTCAGAAAAGCTTGCTGAAGAAGCATATGATCGTAGCCTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCCTCGAGTCACAAAGAAATGTACGCAGAGAAGATGAGCAGTTTGATGATCTTCTATGGTGCCGAGACTGAGGATGAAATGCTACTTGGTAACTTGCAAAACCGTGCTTCATATTTGCAGCGTGATAATAGGAAATATGGTGATATGAAAGATCGGATTCTGCTCTCAGTGAAGAATCTTCAGCGCGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACCTCATGAATATAGGCCTATGGCGTCTGCATGGTATCATGTGACCTATCACCCCACCTATTATAGCCAGGAAAGCTCTTGTTTTCTAAGCTTCCCATGGATAGTTGGTGAGATTTTGTTGCAAATAAAGTCTTTAAACAAAGCAGTTCAAGGATGA 3360 0.4301 MGTATKPLSHTVSVFNIPRSATAKDLLHFLQSKVGPSTVFALEIFSDNANWKSRGAGRVQFETLDAKSRALSLSHLQQLLINSHFLRLSDISEDIIFRPLHRLQNGVLYAGFMLSDNRMSVLGSWEGVAGLVVPQRRKLDFLVWHGDDCYRLEILFEDILESHGYCLGEETKLNALLLKLKFGPRIYKKKTGPDVATTFRSDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIEEELLASDVFSCFPLYKENFRDLALEDGEEFCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLVGLDEESRAVIFQKLHQMGFTCYEPLKFVKTQLHVLSNKKRNPPQSSQKRLIHNNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPNYAVSTGVQKGIFSKPFKTEIYNRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNVKATDIREWMGCFNNIRSVSKCAARMGQLFSSSIQTFEVPPQDVELIPDIEVTYDGVSYCFSDGIGKISQSFARQVAQKLKLDHSPSAFQIRFGGYKGVITVDRQSFRKLSLRNSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEAFLARQQDQLNLLGRMLTDSKAALDVLESLNGADSRSILVKMLHEFNEPNSEPYLSMMLKAYYANQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVKKTMEKFDDNLRKVDDDDSTRIIVGKVVVTKNPCLHPGDVRVLDAIYNEELEEKGLRDCLVFPQNGHRPHPNECSGGDLDGDLFFISWDEDLIPYQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADRERDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPKEFPDFMERVDHPMYISNGVLGKLYRAIIESQLQIKYSFVWSEKLAEEAYDRSLEVNGFEAFLETASSHKEMYAEKMSSLMIFYGAETEDEMLLGNLQNRASYLQRDNRKYGDMKDRILLSVKNLQREAKEWFETSCQPHEYRPMASAWYHVTYHPTYYSQESSCFLSFPWIVGEILLQIKSLNKAVQG* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01102 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 10 1111 IPR007855 GO:0003968
Lapu3g01102 1119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 93 IPR000504 GO:0003723
Lapu3g01102 1119 Gene3D - 2 84 IPR012677 -
Lapu3g01102 1119 Pfam RNA dependent RNA polymerase 380 958 IPR007855 GO:0003968
Lapu3g01102 1119 SUPERFAMILY RNA-binding domain, RBD 6 90 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01102 Lapu-Chr3 11856244 11860991 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01102 K11699 - gmx:100808274 1986.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01102 3 11856244 11860991 Lapu3g01102 3 11856244 11860991 ECH