Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01098 ATGGGAAGTAACAAACGTAAGAGAGGACGCAAACCCAAACGCCCCGCCTCCGAAACCCTAGACCTCCCTACCCCCTCCCCCTCCCCCTCCCACTCCCCTACGCCCGTCACCAACCACGCCGCTGACGCCACTAACTCCGCCCCCCCCGCTTTCTCAATGGACGACGTCTTCTCCGTCGGCAACGTCGATCTCATCGACAACACCGCTTCTCCCCTCGTTCGCCGCCGCCGTGGCCGCCCCAAGAAGCTCCCCACCCTCTCCGACAAGCCCCTCTCTCTTGCAACGGGGCGCCGCCCCGCCCGCCCCCTCGACAACGGCGTCGGAGACTTTTCGGTTCCCGGCGACGCCGGGGTGACTGACTTGGTGGCGATGGAGAGGAAGACGGCGTGGGAGGCGCGGGTGCTGCCGGCGATGGACTCCGTGGTGAAGGTGTTTTGTGTCCACACGGAACCGAATTTCTCGCTGCCGTGGCAACGGAAGAGACAGTACAGCTCGAGTAGTAGCGGGTTTGTGATTGGCGGGAGAAGGGTCCTGACGAATGCGCATTCGGTGGAACACTACACGCAGGTCAAACTCAAGAAACGTGGCTCTGATACCAAGTACCTGGCCACTGTTCTTGCAATTGGAACCGAATGTGATATTGCCATGCTTACAGTGGATGATGATGAGTTCTGGCAGGGGATGTCACCTGTAGAGTTTGGGGAGTTGCCTGCACTTCAAGATGCGGTTACTGTTGTGGGCTACCCAATTGGTGGGGACACTATCTCTGTGACTAGTGGTGTTGTATCGCGCATTGAGATTCTATCTTATGTTCATGGTTCTACAGAACTTTTAGGTTTACAGATAGATGCTGCTATAAATTCTGGTAATTCTGGTGGACCTGCATTCAATGATAAAGGAAACTGTGTGGGGATTGCATTTCAGTCCCTTAAGCACGAAGATGTGGAGAATGTAGGTTATGTCATTCCAACACCAGTTATCATGCATTTTATCCGAGATTATGAGAAGAATGGAGGCTACACTGGGTTCCCTATTCTCGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTGCGAATGGAAACAGGCATGAAACCTGACCAGAAAGGTGTGCGCATTAGAAGAATTGATCCTACTGCTCCAGAATCCGAGGTTTTGAAGCCATCAGATGTTATCCTTAGTTTTAATGGGATTGATATTGCCAATGATGGAACAGTTCCATTTCGTCACGGAGAGCGCATTGGTTTTAGTTATCTCATCTCACAGAAATATACTGGAGATAATGCAGAAATCAAAGTACTGCGAAATTCGGACATTTTAAAATTTGACATTAAACTTGGTAGTCACAGAAGGCTTATTCCATCACATAGCAAGGGCAAGCCTCCCTCGTATTATATAATTGCTGGATTTGTTTTTACAGCTGTTTCAGTTCCTTACCTTCGTTCTGAGTATGGAAAGGATTATGAATATGAAGCTCCAGTCAAGCTTTTGGATAAATTGCTGCATTCAATGCCACAATCACCAGATGAACAACTTGTCGTGGTCTCTCAGGTGCTTGTGGCTGATGTCAACATTGGATATGAAGATATTGTTAACATCCAGGTCCTTGCTTTCAATGGTAAACCAGTGAAAAACCTGAAGAGCTTGGCCAGTATGGTAGAGAGCTGCAATGATGAATATCTAAAATTTAATCTAGATTATGATCAGATAGTGGTGCTTCGCTCAAAGACTGCAAAAGCAGCTACTCTAGATATTCTTGCAACACACCGTATTCCATCAGCGATGTCTGATGATCTTAAGTCGTGA 1806 0.4867 MGSNKRKRGRKPKRPASETLDLPTPSPSPSHSPTPVTNHAADATNSAPPAFSMDDVFSVGNVDLIDNTASPLVRRRRGRPKKLPTLSDKPLSLATGRRPARPLDNGVGDFSVPGDAGVTDLVAMERKTAWEARVLPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDVENVGYVIPTPVIMHFIRDYEKNGGYTGFPILGVEWQKMENPDLRMETGMKPDQKGVRIRRIDPTAPESEVLKPSDVILSFNGIDIANDGTVPFRHGERIGFSYLISQKYTGDNAEIKVLRNSDILKFDIKLGSHRRLIPSHSKGKPPSYYIIAGFVFTAVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADVNIGYEDIVNIQVLAFNGKPVKNLKSLASMVESCNDEYLKFNLDYDQIVVLRSKTAKAATLDILATHRIPSAMSDDLKS* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01098 601 MobiDBLite consensus disorder prediction 71 108 - -
Lapu3g01098 601 MobiDBLite consensus disorder prediction 1 47 - -
Lapu3g01098 601 Pfam Trypsin-like peptidase domain 168 305 - -
Lapu3g01098 601 Gene3D - 225 336 IPR043504 -
Lapu3g01098 601 FunFam protease Do-like 9 226 336 - -
Lapu3g01098 601 Gene3D - 452 601 IPR046449 -
Lapu3g01098 601 Gene3D - 339 451 IPR036034 GO:0005515
Lapu3g01098 601 SUPERFAMILY Trypsin-like serine proteases 134 338 IPR009003 -
Lapu3g01098 601 FunFam Protease Do-like 9 121 224 - -
Lapu3g01098 601 PRINTS HtrA/DegQ protease family signature 197 217 IPR001940 GO:0004252|GO:0006508
Lapu3g01098 601 PRINTS HtrA/DegQ protease family signature 239 263 IPR001940 GO:0004252|GO:0006508
Lapu3g01098 601 PRINTS HtrA/DegQ protease family signature 169 181 IPR001940 GO:0004252|GO:0006508
Lapu3g01098 601 PRINTS HtrA/DegQ protease family signature 385 397 IPR001940 GO:0004252|GO:0006508
Lapu3g01098 601 PRINTS HtrA/DegQ protease family signature 276 293 IPR001940 GO:0004252|GO:0006508
Lapu3g01098 601 SUPERFAMILY PDZ domain-like 369 451 IPR036034 GO:0005515
Lapu3g01098 601 Pfam PDZ domain 453 598 IPR041517 -
Lapu3g01098 601 Gene3D - 119 224 IPR043504 -
Lapu3g01098 601 PANTHER - 129 599 - -
Lapu3g01098 601 Pfam PDZ domain 345 446 IPR001478 GO:0005515
Lapu3g01098 601 CDD PDZ_serine_protease 344 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01098 Lapu-Chr3 11811632 11817703 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01098 K25897 - gmx:100817187 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01098 3 11811632 11817703 Lapu3g01098 3 11811632 11817703 ECH