Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01089 ATGCTGCTAAGTAGTAACTTACAGTTTTCTCGGTGGACTTTCCTCAAACACCTTCCGACACGAAAATTCAAATTAACAACAACACTCTGTCAGCACAAATCCGTTGCCACTCTCTCCCACTTTGGAACGCTAACTTACCACCAGAAACATCAGATTCATCTCTACATCGACACTCTTCTTCAATGGAACAAGCGCATGAATCTCACTGCTGTTAGAGAGGTTAATGAAGTGATGGAAAGGCACGTGGAGGACTCCCTCGCGATTTTGCCTGCTCTGAGCGATTGTTACCGTTCGCACTGCGGCTCTTCATGCGATAAGTTGAGTCTCGTCGATGTTGGAACTGGCGCTGGCCTTCCCGGAGTAGTTTTGGCCATTGCTCGCCCAGAGTGGGATGTAACGCTGATGGAGTCTATGAACAAGCGATGCGTCTTCCTGGAGCACGTTGTCGGTGTTATCGGCTCCTCAAACATTCAAATCGTGAGAGGAAGAGCAGAGAATTTAGGGCAGGATCCTTGCTTCAGAGAGCAATTTGACGTAGCAGTGGCCAGGGCAGTTGCAGAAATGAGAATATTAGCTGAATACTGTCTTCCTTTGGTTCGTGTTGGTGGGTTGTTTATAGCTGCCAAGGGTCATGATCCTGAGGATGAAATTAAGAAAGCTGAAAGTGCCATCGAGAAGGTGGGTGCATCTCTATTGCAAGTGTGCTCAGTGGAATCGCAAAGCCCATATGGTCAGCGAACTGCTGTCATATGTTCAAAGGATCGTCCTACCCCGTTGAAATATCCCCGGGATCCAGGTACACCAGCTAAAGAGCCATTGTAA 822 0.4781 MLLSSNLQFSRWTFLKHLPTRKFKLTTTLCQHKSVATLSHFGTLTYHQKHQIHLYIDTLLQWNKRMNLTAVREVNEVMERHVEDSLAILPALSDCYRSHCGSSCDKLSLVDVGTGAGLPGVVLAIARPEWDVTLMESMNKRCVFLEHVVGVIGSSNIQIVRGRAENLGQDPCFREQFDVAVARAVAEMRILAEYCLPLVRVGGLFIAAKGHDPEDEIKKAESAIEKVGASLLQVCSVESQSPYGQRTAVICSKDRPTPLKYPRDPGTPAKEPL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01089 273 FunFam Ribosomal RNA small subunit methyltransferase G 28 273 - -
Lapu3g01089 273 Hamap Ribosomal RNA small subunit methyltransferase G [rsmG]. 41 250 IPR003682 GO:0005737|GO:0006364|GO:0008649
Lapu3g01089 273 MobiDBLite consensus disorder prediction 254 273 - -
Lapu3g01089 273 NCBIfam 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 54 249 IPR003682 GO:0005737|GO:0006364|GO:0008649
Lapu3g01089 273 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 6 273 IPR003682 GO:0005737|GO:0006364|GO:0008649
Lapu3g01089 273 Gene3D Vaccinia Virus protein VP39 25 273 IPR029063 -
Lapu3g01089 273 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 273 IPR029063 -
Lapu3g01089 273 CDD AdoMet_MTases 109 206 - -
Lapu3g01089 273 Pfam rRNA small subunit methyltransferase G 49 238 IPR003682 GO:0005737|GO:0006364|GO:0008649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01089 K03501 - gmx:100818428 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01089 3 11692775 11697296 Lapu3g01089 3 11692775 11697296 ECH