Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01082 ATGGTTTCCGATTCAATCTCTGCCGTGCCGATTCCCTCCGCCGCAAACACTAAGAACCCCGGGAAGAAGAAGAGGACTAACAGGTCTGCAAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAACAGTGGCTATCGCAAGGTGCGGTGAAGAGTAAAGGATGCAAGGACGGTGTGGACGATGAGGTCGTCCACGCCCCGCCGCCGTCAGTAAATCATGGCAAGCACTCGTTGGAGCCTCTGAACACGAGGCGCCAAGGCGAAGAAGACGACGGATTGATCCATCATGACAGCGATTCTGAGTCTCCGACCAACTGTCCTGCCGGCGTGTCGTGCGGCAACGATTCGGGGACGAATTTCACCGGCAGCAGTAGCGGCGGGAGCAGCAGCAGCAGCAGTTCAAGCAGCGGCGGGTGCTGTTCCGGGAACGTTACTGAGGAGGAGGAAGAAGAAGGTGAGGACGATGATGATGGTTGCTTGGATGATTGGGAGGCCATGGCAGATGCTTTAGCCGCCGATGACAAGCACGAAAACCCTTGTTCTGATTCACCCCCTGTGGTTTTGCCTGGTGAAGGGTCCAATTTAGGGTCTCCGAATTCAAAACCCGAGAGTGGTAGATTGGTTCCTTGGGGCTCTGGTAGTAGCCGCGCGTGGAGGGCCGATGACGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCGAACCCTGATCGGCGCTGCGTAGGAGGGGTCCCTTGGGGCCGTGTTTCCACTCCGTCCTCGTGTCCTATTTGCTGTGAGGATCTGGATTTGACGGACACGAGTTTTTTGCCTTGTTTCTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATTCTGGAGGAGGATGGTCGTTGTCCCGGATGTAGAAAGCCTTATGAGTGTGAGCCTGTTGAGACAGAGGCGAGTGTGCATGGAGGCAGCCTCACTCTTCGGTTGGCACGTTCCTGCAGCATGATCGAGAGGTCTTGA 1008 0.5565 MVSDSISAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKSKGCKDGVDDEVVHAPPPSVNHGKHSLEPLNTRRQGEEDDGLIHHDSDSESPTNCPAGVSCGNDSGTNFTGSSSGGSSSSSSSSSGGCCSGNVTEEEEEEGEDDDDGCLDDWEAMADALAADDKHENPCSDSPPVVLPGEGSNLGSPNSKPESGRLVPWGSGSSRAWRADDAFRPQSLPNLSKQHSMPNPDRRCVGGVPWGRVSTPSSCPICCEDLDLTDTSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVHGGSLTLRLARSCSMIERS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01082 335 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 256 332 IPR039780 GO:0004842|GO:0030014
Lapu3g01082 335 MobiDBLite consensus disorder prediction 144 163 - -
Lapu3g01082 335 Pfam RING/Ubox like zinc-binding domain 260 306 - -
Lapu3g01082 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 317 IPR013083 -
Lapu3g01082 335 FunFam RING/U-box superfamily protein 253 318 - -
Lapu3g01082 335 SUPERFAMILY RING/U-box 255 311 - -
Lapu3g01082 335 MobiDBLite consensus disorder prediction 1 214 - -
Lapu3g01082 335 ProSiteProfiles Zinc finger RING-type profile. 260 302 IPR001841 -
Lapu3g01082 335 CDD mRING-HC-C4C4_CNOT4 259 303 IPR039515 -
Lapu3g01082 335 MobiDBLite consensus disorder prediction 78 98 - -
Lapu3g01082 335 MobiDBLite consensus disorder prediction 99 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01082 Lapu-Chr3 11623956 11627105 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01082 - - var:108330419 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01082 3 11623956 11627105 Lapu3g01082 3 11623956 11627105 ECH