Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01072 ATGAAGATGAGTGAGATGTGGACAACAATGGGGTCAACCTTAGCTAGCTTCATGTTCTTGTGGACGATCATGAGGCAGTACTGTCCCTACGGGGTTCAACGTTTCTTTGAGAAGTACACACATAGGATCATGAGTTACTTTTCCCCTTACATTCGAATCTCCTTCCATGAGTACATGGGAGACAGGCTAAAGCGCAGTGAGGCCTATGCAGCTGTGGAGGCATACCTCAGTGCCAACACATCAAAGAGTGCTAAAAGGCTCAAAGCTGAAATGGGTAAGGATAGCAGCAACTTGGTGTTGACTATGGATGAGTATGAAAGGGTAACGGATGACTACGAGGGTGTCAAAGTTTGGTGGGTCTCTAGCAAAGTTATGTCACCAACAAGATCTCCAATGTCTTATTATCCAGAACAGGAGAAAAGGTTCTACAAGCTCACTTTTCACAACAAGTATAGAGACATAATAACTGAATCCTATTTGGAGCATGTGATGAGGGAGGGGAAGGAGATTCGTTTCAGGAACAGGCAGAGGAAGTTGTACACCAATAGCCCTGGCTATAAGTGGCCAAGTTACAAGCAAACCATGTGGAGCCACATTGTGTTTGAGCATCCTGCTACTTTTGAAACAATGGCCTTGGAGCCTGAGAAAAAAAGGGAGATCATTGAGGATTTGGTCACTTTCAGCAAGAGCAAGGATTTCTATGCAAGGATTGGGAAGGCATGGAAGAGGGGGTACCTTCTTTATGGCCCTCCTGGGACAGGCAAGTCCACTATGATTGCTGCAATGGCCAATTTGTTGGCCTATGATGTCTATGACTTGGAGCTCACTGCAGTGAAGGACAACACAGAGTTGAGGAAGCTTCTAATTGAGACAACCAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCTCTTGATCTTACAGGACAGAGGAAGAAGAAGGCAGATAAGTTGTCGGACGAGGAGACGGATAAGGATGTTGTTGGAAGAAAAGAGGCCAAGGAAGAAGGAGGGAGTGGCAGCAAAGTCACACTCTCAGGGCTGTTGAATTTCATTGATGGGATTTGGTCTGCTTGTGGAGGGGAGAGGTTGATTGTGTTCACAACTAATTATGTGGAGAAACTTGATCCTGCACTCATTAGAAGGGGGAGAATGGACAAACACATTCAGCTCTCCTATTGCACTTTTGATGGCTTCAAAGTGCTTGCAAATAATTACTTGAAGCTACAAACTCATCCTTTGTTTGACACTATCAATAGCCTAATAGGAGAGGCCAACATCACCCCGGCTGATGTTGCTGAAAACCTCATGCCTAAGTCCCCACTTGATGATCCTCACAAGTGTCTCTCAAACTTGATTGAAGCACTTGAGGAAGCTGCAAAAGTTGAGGAGGTGCTGGAGCAGAGTTGTCCCATTCAACACGAGGAACTTCTTCAACAAAATGGGTCCATTAAGGAAAATGGTGAGCTTCCAGGTGACCAAGCAATGAATCAATGCCAGCTATGGCTGTCTAATGATACATAA 1527 0.4473 MKMSEMWTTMGSTLASFMFLWTIMRQYCPYGVQRFFEKYTHRIMSYFSPYIRISFHEYMGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSSNLVLTMDEYERVTDDYEGVKVWWVSSKVMSPTRSPMSYYPEQEKRFYKLTFHNKYRDIITESYLEHVMREGKEIRFRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMALEPEKKREIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKADKLSDEETDKDVVGRKEAKEEGGSGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYLKLQTHPLFDTINSLIGEANITPADVAENLMPKSPLDDPHKCLSNLIEALEEAAKVEEVLEQSCPIQHEELLQQNGSIKENGELPGDQAMNQCQLWLSNDT* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01072 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 458 IPR027417 -
Lapu3g01072 508 Pfam Domain associated at C-terminal with AAA 29 121 IPR025753 -
Lapu3g01072 508 Gene3D - 390 462 - -
Lapu3g01072 508 FunFam AAA-ATPase ASD, mitochondrial 197 390 - -
Lapu3g01072 508 CDD RecA-like_BCS1 220 390 - -
Lapu3g01072 508 Gene3D - 201 389 IPR027417 -
Lapu3g01072 508 SMART AAA_5 241 396 IPR003593 GO:0016887
Lapu3g01072 508 ProSitePatterns AAA-protein family signature. 364 383 IPR003960 GO:0005524|GO:0016887
Lapu3g01072 508 Pfam ATPase family associated with various cellular activities (AAA) 246 393 IPR003959 GO:0005524|GO:0016887
Lapu3g01072 508 PANTHER BCS1 AAA-TYPE ATPASE 9 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01072 Lapu-Chr3 11487302 11489263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01072 206 420 Miscellaneous Gene Families AT5G58870 28.251 8.72e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01072 - - gmx:100798176 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01072 3 11487302 11489263 Lapu3g01072 3 11487302 11489263 ECH