Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01024 ATGGAACATAGCTCATGCTGTTTTTTTATATCGCAGGTTGAGATGGCAGCGGCAACTGCAGCTTCTTTCACTATTGGATCCACCGGTTCCCTTCGCCAAAGAGGAAGCTCTTTTCCTCAATCAAGGTCTTTTGGCTTGAAATTCAACTCCCAGAATCCTTTGAAGAGTTTCTGTGGCCTCAAGGCTATGTCATCTGTGAGATGTGAGTCAGAATTATCTTTCTTAGGTAACAAAAGTGGTTCTGCTCTGCGGGCATCTTTTGCATCCAAGGCTCAGAAGGAAAACAGCCAGAACTTCAACTACCAGTTGCAGCCTCAGGCTTCGTACAAAGTTGCAGTTCTTGGTGCTGCTGGAGGGATTGGGCAGCCGCTCGCGCTTCTCATCAAGATGTCCCCTTTAGTTTCCGACCTGCATCTCTATGATATTGCAAATGTCAAGGGAGTCGCTGCCGATATCAGTCACTGCAACACACCCTCACAAGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCAAATTGTTTGAATGGTGTGGATGTTGTTGTCATTCCTGCGGGTGTTCCCAGGAAGCCCGGCATGACTCGTGATGACCTTTTCAACATCAATGCTGGCATAGTCAGGGACTTGGTTTCTGCTGTTGCGGATAATTGCCCTGGTGCTTTTATTCAAATTATCAGTAACCCTGTAAACTCTACTGTGCCTATTGCTGCGGAAGTTTTGAAACAGAAGGGTGTCTATGATCCTAAAAAGCTCTTTGGTGTTACCACACTGGATGTTGTGAGGGCAAACACATTTGTGGCCCAGAGGAAGAACCTGAAGCTGATTGATGTTGATGTCCCTGTTATTGGGGGCCATGCCGGGATTACCATTCTTCCTCTGCTGTCAAAGACAAGGCCGTCAGCGAGTTTCACTGATGAAGAGGTCGAGGAGTTGACTGTAAGGATTCAAAACGCAGGAACTGAAGTTGTGGAAGCAAAGGCAGGTGCTGGGTCTGCTACCTTGTCAATGGCGTATGCAGCTGCTAGATTTGTTGAATCGTCTCTGCGTGCACTTGATGGAGACGGGGATGTGTACGAGTGCTCATTTGTGCAATCAGATTTGATCGACCTTCCATTCTTTGCTTCAAGGGTGAAGCTTGGTAGGAAAGGTATCGAGGCTTTAATTCCATCTGATCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAGCTGTTGCTGCTTAA 1284 0.4727 MEHSSCCFFISQVEMAAATAASFTIGSTGSLRQRGSSFPQSRSFGLKFNSQNPLKSFCGLKAMSSVRCESELSFLGNKSGSALRASFASKAQKENSQNFNYQLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSQVRDFTGASELPNCLNGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPGAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVIGGHAGITILPLLSKTRPSASFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVQSDLIDLPFFASRVKLGRKGIEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQAVAA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01024 427 SUPERFAMILY LDH C-terminal domain-like 253 420 IPR015955 GO:0003824|GO:0016616
Lapu3g01024 427 NCBIfam malate dehydrogenase 110 421 IPR010097 GO:0006099|GO:0030060
Lapu3g01024 427 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 98 253 IPR036291 -
Lapu3g01024 427 FunFam Malate dehydrogenase 107 253 - -
Lapu3g01024 427 FunFam Malate dehydrogenase 254 422 - -
Lapu3g01024 427 PANTHER MALATE AND LACTATE DEHYDROGENASE 91 423 - -
Lapu3g01024 427 Pfam lactate/malate dehydrogenase, NAD binding domain 110 252 IPR001236 GO:0016491
Lapu3g01024 427 Gene3D - 254 425 IPR015955 GO:0003824|GO:0016616
Lapu3g01024 427 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 254 419 IPR022383 GO:0016616
Lapu3g01024 427 CDD MDH_glyoxysomal_mitochondrial 109 420 IPR010097 GO:0006099|GO:0030060
Lapu3g01024 427 Gene3D - 107 253 - -
Lapu3g01024 427 ProSitePatterns Malate dehydrogenase active site signature. 253 265 IPR001252 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01024 Lapu-Chr3 10961771 10964785 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01024 K00026 - gmx:100783173 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01024 3 10961771 10964785 Lapu3g01024 3 10961771 10964785 ECH