Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01009 ATGGGGCAAGAGAACCACCACAAGCGCAGCACCAGCGCCGGTTTACCCACCTCCAACGCCAGAGGCCGCGCCTCCGCTCTTCCCCGCGGCCGCCAGATCCAGAAGACCTTCAACAACATCAAGATCACCATCCTCTGCGGCTTCGTCACCATCCTCGTCCTCCGCGGCACCATCGGCGTCAACCTCGGCTCCTCCGACGCCGACACCGTCAACCAGAACCTTATTGAGGAGACCAACCGCATCCTCGCCGAGATCCGATCCGACGCCGACCCATCCGATCCCGACGACCAGCAACCCTTCAACCCCAACGCCACCTTCACCCTCGGCCCCAAAATCGATAATTGGGACCAAGAGCGCCAAAATTGGCTCCGTCAAAACCCTGAATACCCTAATTTCATCAGAGGTAAACCTCGCATCTTGCTCCTCACTGGTTCCCCTCCCAAACCCTGTGATAACCCTATTGGAGATCATTACCTCTTGAAGTCCATTAAGAACAAGATTGATTACTGTAGATTGCACGGGATTGAAATTGTGTACAATTTGGCTCATTTGGATGTGGAACTTGCTGGCTACTGGGCTAAGTTGCCTATGATTCGGAGGCTGATGTTGTCACATCCCGAGGTTGAGTGGATTTGGTGGATGGACAGTGATGCTTTTTTTACTGATATGGTGTTTGAGCTTCCTATGTCTAAGTACGATGCGTATAATTTAGTTCTTCATGGATACCCTGATTTGTTGTTTGACCAGAAGTCTTGGATTGCGGTGAATACTGGGAGTTTTCTGTTTAGGAACTGTCAGTGGTCTTTGGATTTGCTTGATGATTGGGCTCCCATGGGCCCCAAGGGGCCGGTTCGCGAGGAGGCCGGGAAGATCTTGACGGCGAATCTCAAGGGGAGGCCGGCATTTGAGGCCGACGATCAGTCTGCATTGATATACTTGCTGCTGTCCAAGAAGGAGAAGTGGATGGATAAGGTGTTTCTTGAGAATTCGTTCTATTTGCACGGTTACTGGGCAGGGTTGGTTGACCGGTATGAGGAGATGATTGAGAAGTATCACCCCGGGTTGGGAGATGAGAGGTGGCCATTTGTGACACATTTTGTCGGATGTAAGCCGTGTGGGAGCTATGGAGATTATCCTGTGGAGAGGTGCCTCAGTAGCATGGAGAGGGCTTACAATTTTGCTGATAATCAGGTGCTTAAGCTCTATGGGTTCAGGCATCGTGGTCTGTTGAGCCCCAAGATCAAGAGGATCAGAAATGAGACTGTTACTCCTTTGGAGTTTGTAGACCAATTTGATATTCGAAGGCATTCTACGGAAAGCAAGGAATTGAAGAGCTAG 1338 0.5082 MGQENHHKRSTSAGLPTSNARGRASALPRGRQIQKTFNNIKITILCGFVTILVLRGTIGVNLGSSDADTVNQNLIEETNRILAEIRSDADPSDPDDQQPFNPNATFTLGPKIDNWDQERQNWLRQNPEYPNFIRGKPRILLLTGSPPKPCDNPIGDHYLLKSIKNKIDYCRLHGIEIVYNLAHLDVELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDAFFTDMVFELPMSKYDAYNLVLHGYPDLLFDQKSWIAVNTGSFLFRNCQWSLDLLDDWAPMGPKGPVREEAGKILTANLKGRPAFEADDQSALIYLLLSKKEKWMDKVFLENSFYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSMERAYNFADNQVLKLYGFRHRGLLSPKIKRIRNETVTPLEFVDQFDIRRHSTESKELKS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01009 445 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 22 430 IPR008630 GO:0016020|GO:0016757
Lapu3g01009 445 MobiDBLite consensus disorder prediction 1 28 - -
Lapu3g01009 445 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 136 281 IPR029044 -
Lapu3g01009 445 FunFam xyloglucan 6-xylosyltransferase 2 135 286 - -
Lapu3g01009 445 Pfam galactosyl transferase GMA12/MNN10 family 136 374 IPR008630 GO:0016020|GO:0016757
Lapu3g01009 445 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01009 Lapu-Chr3 10830466 10832320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01009 10 445 Glycosyltransferase AT5G07720 79.318 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01009 K08238 - gmx:100819400 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01009 3 10830466 10832320 Lapu3g01009 3 10830466 10832320 ECH