LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g00989	ATGTCGGGTGCCAAGAAATCTCCTTTGAAGGTTGCTAAACCTAGTTCTGTTGAATCTTGGACTAATCCATTTGATTCTGATGATGAGGAGAAGGATACCAAAAAGTATAGTTCCTCAAGAAAGACATCTTCGGATCGTGCACTTGTTGCACTGGAAGTTAACACCAACCCCTTTAATGATGACGTTGATGCCACTAAGAAATCTTCATCGACTTCGTATGCCTTTCAATCGGCCAACCGGAACAGGTACAAGAATGATTTTCGCGATTCTGGCGGATTGGAGAATCAATCGGTTCAAGAACTGGAGAGTTTTGCTGTTTACAAGGCTGAAGAGACTACAAATTCAGTCAACAATTGTTTGAAGATAGCAGAGAATATAAGAGAGGATGCCACCAAGACACTAGTCACCCTTCATCAACAGGGTGAGCAAATTACCAGGAGTCACCATGTTGCTGCTGACATTGACCATGATTTAAGTCGGGGGGAAAAGCTCTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCAAAGAAGACGCGAGCAATAACAGGCCCAGTTATTGTTGGAGATGACACAGTGAGGAGTAAGGGCAGTCATCTGGAGCAGAGAGAGAAGTTGGGACTGACTTCTGTCCCAAAAGGTCAGGCCAAGCTGCGGACCCCACCTCAAGAACCAACCAATGCACTTGAAAAAGTTGAGGTTGAAAAAAAGAAGCAAGATGATGCACTATCAGATTTAAGTGATCTGTTAGGAGAGCTTAAAGACATGGCTGTTGACATGGGATCCGAGATTGAGAGGCATAACAAAGCCTTGAATCATCTATACGATGATGTGGATGAGTTGAATTTCCGAATGAAAGGTGCTAATCAACGTGGCCGTCGCTTACTTGGAAAATAA	903	0.4396	MSGAKKSPLKVAKPSSVESWTNPFDSDDEEKDTKKYSSSRKTSSDRALVALEVNTNPFNDDVDATKKSSSTSYAFQSANRNRYKNDFRDSGGLENQSVQELESFAVYKAEETTNSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHHVAADIDHDLSRGEKLLGSLGGLFSKTWKPKKTRAITGPVIVGDDTVRSKGSHLEQREKLGLTSVPKGQAKLRTPPQEPTNALEKVEVEKKKQDDALSDLSDLLGELKDMAVDMGSEIERHNKALNHLYDDVDELNFRMKGANQRGRRLLGK*	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g00989	300	Gene3D	-	92	169	-	-
	Lapu3g00989	300	SUPERFAMILY	SNARE fusion complex	234	298	-	-
	Lapu3g00989	300	PANTHER	SYNAPTOSOMAL ASSOCIATED PROTEIN	22	300	-	-
	Lapu3g00989	300	MobiDBLite	consensus disorder prediction	58	74	-	-
	Lapu3g00989	300	CDD	SNARE_SNAP25N_23N_29N_SEC9N	105	167	IPR044766	GO:0005484\|GO:0031201
	Lapu3g00989	300	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	235	297	IPR000727	-
	Lapu3g00989	300	SMART	tSNARE_6	101	168	IPR000727	-
	Lapu3g00989	300	SMART	tSNARE_6	230	297	IPR000727	-
	Lapu3g00989	300	Coils	Coil	231	251	-	-
	Lapu3g00989	300	FunFam	SNAP25 homologous protein SNAP33	92	169	-	-
	Lapu3g00989	300	Gene3D	-	232	299	-	-
	Lapu3g00989	300	SUPERFAMILY	SNARE fusion complex	96	166	-	-
	Lapu3g00989	300	MobiDBLite	consensus disorder prediction	55	74	-	-
	Lapu3g00989	300	MobiDBLite	consensus disorder prediction	24	41	-	-
	Lapu3g00989	300	FunFam	SNAP25 homologous protein SNAP33	232	299	-	-
	Lapu3g00989	300	MobiDBLite	consensus disorder prediction	1	48	-	-
	Lapu3g00989	300	CDD	SNARE_Qc	238	296	-	-
	Lapu3g00989	300	MobiDBLite	consensus disorder prediction	209	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g00989	Lapu-Chr3	10648563	10651625	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g00989	K18211		-	gmx:100809874	512.301

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu3g00989	3	10648563	10651625	Lapu3g00989	3	10648563	10651625	ECH