Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00975 ATGGAGCGCGAGAGTGAGAAGAAGAGTAGCGAAAGTAGTGTCAACGGTCAACGCCGTGTGGGTTTACTGTACGATGGGAGAATGTGTAAGCACCACACGCCGAACAACGAGGACCACGTCGAGACTCCTAATCGCATTAGGTCAATTTGGAACAAACTCCGGAGTGCCGGCATTCCCCAACGATGTGTGATTCTGGAGGCCAAGAAAGCTGAAGACAAACATCTGCTGTTAGTGCATTCTGAAAATCATGTAAAACTGATTAAGAACATTAGCTCCAGGCAATTCAGTTTGCGGAGGCGCCATATTGCCTCCAAATTGAATTCCATATATTTTAATGAAGGTTCATCTGAAGCTGCGTACCTTGCTGCTGGCTCTGCAGTAGAGGTTGTTGAAAAAGTTGCAAGTGGGGAATTGGATTCTGCTGTTGCTATTGTTAGGCCTCCAGGTCATCATGCAGAACATAATGAAGCTATGGGATTTTGTCTCTTCAACAACGTGGCAATTGCTGCAAGATATCTCTTAGACGAAAGACCAGATTTAGGTGTGAAGAAAATTTTAATTGTTGATTGGGATGTCCATCATGGAAATGGTACTCAAAAAATGTTCTGGAATGACTCTCGAGTTTTATTCTTCTCCGTTCACAGGCATGAATTTGGGAATTTTTATCCCGCTAATGACGATGGATTTTATACCAAGGTGGGAGAAGGAGCAGGTGCTGGATATAATATAAATGTACCCTGGGAAAATGGAAGATGTGGTGATGCTGATTACTTTGCAGTGTGGGACCACATCTTGCTTCCTGTTGCCAAAGAATTTAATCCAGACATAATTATAGTTTCTGCTGGATTTGATGCAGCTGTTGGTGACCCTTTGGGAGGATGTCGTGTCACACCATTTGGTTATTCTGTTCTGTTGGAGAAGTTGATGAGTTTTGCTGAAGGTAGGATTGTACTGATTTTAGAAGGGGGATATAATCTTGATTCCATTGCAAAATCAATGCATGCTTGCTTGGAAGTTTTGCTAAAAGACAAGCCTGTTATTGGATCCTCAAAGGCCTATCCATTTCAGTCTACATGGAATGTGATTCAAGCGGTTCGCCAGATGTTATGTCCCTTTTGGCCTACACTTGCATCTGAACTACCACAAGAGTTAATCTCACAAACAGCACCCCCTCCGTATACTCTAATCTCGAGCTCCGACTCTGAAGATGAGGATGACAAGGGTGCACCAAGTTTAGAAAATCTTGGAGAACTTCTTGAGGATGTCATAAAACCACTTTCTAGTCTGACAGTTGATGATGATGAAGAGATTCATGTTTCTAGTACTTGGCGATCTGAATTGTCAAATGTTTATTTATGGTATGCCTCATATGGATCAAATATGTGGAAAGCAAGATTTAATTGCTACCTAGAAGGTGGACAGGTGGATGGTATGGTGAAGCAGTGTTCTGGTTCAGTGAACAGAAATCCGCCTAAGGAGATCCTGTGGAAGACTTTTCCTTGTGATATATTCTTTGGTCGTGAATCATCGTTTTCATGGGGACTGGGAGGCGTTGCATTTCTTAATCCTGAGAAAAAGTTTGAAGGCAAGACCTACATGTGCATGTACAAAATTTCGCTAGAGCAGTTCAATGATATTTTATTTCAGGAAAACATGTTAAGCCTTGATGCGGGCTCTCCTTTATTTGATTTAACTACCTTGAATGCTATGTCTGACAAGGAGTTCAACTCCTTTGAGGTTGTCAAGGGTGCTTGGTATGGCAATGTTGTCTACTTAGGAAAGGAGCAGGATATTCCAGTAATTACCATGACGTCTTCGCTTCTTGATATTGAACGTTTCAAATCTGGAAAGCTACCATTACGTGCCCCTAATAAATCATATACCAACTCCTTAGTTAAAGGTTTGGTAGAGGGAGAACAACTTTCGGAAGCTGAAGCCATTGCCTACATAGAAGGTGCTGCTAAATCGTTGCGATTCGCATAG 1983 0.4206 MERESEKKSSESSVNGQRRVGLLYDGRMCKHHTPNNEDHVETPNRIRSIWNKLRSAGIPQRCVILEAKKAEDKHLLLVHSENHVKLIKNISSRQFSLRRRHIASKLNSIYFNEGSSEAAYLAAGSAVEVVEKVASGELDSAVAIVRPPGHHAEHNEAMGFCLFNNVAIAARYLLDERPDLGVKKILIVDWDVHHGNGTQKMFWNDSRVLFFSVHRHEFGNFYPANDDGFYTKVGEGAGAGYNINVPWENGRCGDADYFAVWDHILLPVAKEFNPDIIIVSAGFDAAVGDPLGGCRVTPFGYSVLLEKLMSFAEGRIVLILEGGYNLDSIAKSMHACLEVLLKDKPVIGSSKAYPFQSTWNVIQAVRQMLCPFWPTLASELPQELISQTAPPPYTLISSSDSEDEDDKGAPSLENLGELLEDVIKPLSSLTVDDDEEIHVSSTWRSELSNVYLWYASYGSNMWKARFNCYLEGGQVDGMVKQCSGSVNRNPPKEILWKTFPCDIFFGRESSFSWGLGGVAFLNPEKKFEGKTYMCMYKISLEQFNDILFQENMLSLDAGSPLFDLTTLNAMSDKEFNSFEVVKGAWYGNVVYLGKEQDIPVITMTSSLLDIERFKSGKLPLRAPNKSYTNSLVKGLVEGEQLSEAEAIAYIEGAAKSLRFA* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00975 660 PRINTS Histone deacetylase superfamily signature 147 170 IPR000286 -
Lapu3g00975 660 PRINTS Histone deacetylase superfamily signature 274 284 IPR000286 -
Lapu3g00975 660 Pfam Histone deacetylase domain 39 339 IPR023801 -
Lapu3g00975 660 SUPERFAMILY Arginase/deacetylase 18 374 IPR023696 -
Lapu3g00975 660 Gene3D Histone deacetylase domain 13 389 IPR037138 -
Lapu3g00975 660 FunFam Histone deacetylase 15 13 391 - -
Lapu3g00975 660 Gene3D - 442 656 - -
Lapu3g00975 660 PANTHER HISTONE DEACETYLASE 9-RELATED 13 393 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00975 Lapu-Chr3 10527288 10533338 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00975 K11406 - gmx:100788831 1157.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00975 3 10527288 10533338 Lapu3g00975 3 10527288 10533338 ECH
Lapu3g00975 3 10527288 10533338 Lapu9g00692 9 8528939 8531505 PCT