Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00969 ATGGCACAGACACAAACCCGGAGACCCTGTTCAAGCATCCTCGATTCTCTGGGGGAAGAAATCGTGAGAATCATCGCACCCGTTTCAATATGCATGTTCTTGGTCGTAATATTGGTGTCAATTCTGAACACAGATTCTTCTCTCTTCGACGCATCGATGAGCATGGTCACCATAGCCTACACCGAGACAACCTCGGACTCCACATGGGACAAATTCCTTGGTGCCCTTTTGAACTCATTGGCTTTCGTCGTCCTCATCACCTTCGCAACCTTCATCCTGGTCCTCCTCTTCTACTTCCGATGCACCAGGTTCTTAAAACTCTACATGGCTTTCTCTACTTTCATCGTGCTGGGATTCCTCGGCGGTGAAGTCTCGCTGTTCTTGATCCAACAGTTTAACACTCCCATTGATTGCATTACGTTTTTCCTCTTACTGTGTAATTTCGCCGTTGTGGGTGTTTTGACCGTGTTTATGTCAAAAATGGCGATTTTTGTGACGCAGGGGTATTTGGTTGTTATTGGAATATTGATTGCTTATTCGTTTACTATGTTGCCTGAGTGGACCACCTGGGCCTTGCTTGTTGCTATGGCGCTGTATGATGTTGCTGCAGTTTTGTTACCAATTGGGCCGTTAAGGCTTTTGGTGGAGCTTGCAATATCAAGGGATGAGGAAATCCCCGCATTGGTTTATGAGGCTAGGCCGGTGGTGAACCATGGTAATTTGAGTCCTGGGGATCTTGTGCAGAGGCGGCGGTTATGGAGAGAAAGGAGGGTTGAGAATTCAAATCTCCAATCTGATTCCAACTTGAATGCCAACTCACCGTCGGTTCATGGCTCCTGTGTTGAATTCTCCTCCGATTCTGATGCAAGCCCCAGCAATAACTCAAACATAGTTAGGGAAAATGCCTCTGGAAATGCAAATCTGAGAGCTAATAGTTCTGGTGTCTCTTATGGTTACAGAAATTTGGTGAGTTCAGAAGAGGCAAGGGTTCGAGTTCATGAGACTGATTCAGACCTTTCTGCGCCCTTGATTGATCGTGGAATGAATGCCCAGCACGGTAGGGGGGAAGATGCTGTGCCAAGTGAGAATTTAATGCTAGAAGGAATTGGATTGGGTTCTTCTGGTTCAATCAAGTTAGGTCTTGGAGATTTCATCTTCTATAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTTTATGACGGTGTATGCATGTTATCTTGCTATCATTGCGGGTCTTGGCATAACTTTGATCCTTTTAGCTTTATATCAGAAAGCTTTGCCTGCTCTTCCTGTCTCAATAGCACTGGGTGTGTTGTTTTATTTCTTGACCAGGCTCTTACTTGAAATATTTGTAGTACAATGTTCTTTAAATCTCCTGCTGTTCTAA 1389 0.45 MAQTQTRRPCSSILDSLGEEIVRIIAPVSICMFLVVILVSILNTDSSLFDASMSMVTIAYTETTSDSTWDKFLGALLNSLAFVVLITFATFILVLLFYFRCTRFLKLYMAFSTFIVLGFLGGEVSLFLIQQFNTPIDCITFFLLLCNFAVVGVLTVFMSKMAIFVTQGYLVVIGILIAYSFTMLPEWTTWALLVAMALYDVAAVLLPIGPLRLLVELAISRDEEIPALVYEARPVVNHGNLSPGDLVQRRRLWRERRVENSNLQSDSNLNANSPSVHGSCVEFSSDSDASPSNNSNIVRENASGNANLRANSSGVSYGYRNLVSSEEARVRVHETDSDLSAPLIDRGMNAQHGRGEDAVPSENLMLEGIGLGSSGSIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLILLALYQKALPALPVSIALGVLFYFLTRLLLEIFVVQCSLNLLLF* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00969 462 PANTHER PRESENILIN 9 462 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lapu3g00969 462 SMART psh_8 73 448 IPR006639 GO:0004190|GO:0016020
Lapu3g00969 462 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lapu3g00969 462 PRINTS Presenilin family signature 183 190 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lapu3g00969 462 PRINTS Presenilin family signature 200 217 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lapu3g00969 462 Gene3D Presenilin 370 454 IPR042524 -
Lapu3g00969 462 Pfam Presenilin 18 452 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lapu3g00969 462 MobiDBLite consensus disorder prediction 263 304 - -
Lapu3g00969 462 FunFam Presenilin 352 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00969 Lapu-Chr3 10490110 10491510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00969 5 462 Miscellaneous Gene Families AT2G29900 59.259 1.31e-158 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00969 K04505 - gmx:100780823 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00969 3 10490110 10491510 Lapu3g00969 3 10490110 10491510 ECH