Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00966 ATGGCGTCCTTACCCAGTTTTACTCCTTTTTTGTTTCTGTTGCTTGTTATTGGGTGCACTGCAAGGCCTTTTTATCCTCTTCCCAATAAAGGTGATGGTGGAAGTAGGAAGCCCCTACAAACTTTTCGCCCATATAACATTGCACATCGTGGTTCAAATGGAGAGCTTCCTGAAGCAACTCGTCCTGCATATTCGAGAGCTATTGAAGAAGGTGCAGACTTCATTGAAACTGATATCTTATCATCCAAAGATGGTGTTCTTATATGTTTCCATGATGTTACCCTTGATGATACTACTGACATTGCAAATTACAAAGAGTTTGCTAATCGTAAAAGAACGTATGAAGTCCAAGGGGAAAACATCACTGGGTTCTTTACTGTTGATTTCACATTAAAGGAGTTAAAGTCATTGAGGGTGAGACAGAGGTATAGATTCAGGGATCAACAGTTTAGTGGAAAGTTTCAAATCATCACTTTTGATGAGTTCATTACCATAGCACTGGATGCGCCCAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTATTTATCAATCAACATGTTAAATGGTCAGATGGCAAAAGATTTGAGGACAAGTTTGTGGAGACACTTCAGAAATATGGGTTCAAGGGTTCCTACCTGTCAAAAAATTGGCTGAGACAACCAGTATTTATTCAGTCATTTGCTCCAACTTCACTCGTGTATATATCAAGTAAAACAGACTTGCCCAAAATTTTGTTAATTGACGAAGTTGATATTCCAACTCAAGACACCAATCAGTCATACTGGGAGATTACATCTGATAATTACTTAAACTACATAAAGCAATATGTTGTGGGAATTGGACCGTGGAAGGACACGTTGGTACCTGTGGTAAATAATTATATGATAACTCCTACTAATCTTGTTTCCAGGGCACATGCTCATAATCTGCAGGTGCATCCATATACTTACCGAAATGAGAACTGTTTTTTGCACTTCAACTTTAGTCAAGATCCGTATATGGAGTATGATTACTGGATAAACAAGGTAGGCATTGATGGTCTGTTCACAGACTTCACTGGTAGTCTTCATCATTTTCAGGAATGGACCTCTAAGCATCAAGGTGATGATGATGATTATGATGCTGAAGATGGCAATGATATCACTGCATCCAAGCTATTGCATAAAATTGCTTTGTTGATCTCTTCTTATAAATGA 1203 0.3815 MASLPSFTPFLFLLLVIGCTARPFYPLPNKGDGGSRKPLQTFRPYNIAHRGSNGELPEATRPAYSRAIEEGADFIETDILSSKDGVLICFHDVTLDDTTDIANYKEFANRKRTYEVQGENITGFFTVDFTLKELKSLRVRQRYRFRDQQFSGKFQIITFDEFITIALDAPRVVGIYPEIKNPVFINQHVKWSDGKRFEDKFVETLQKYGFKGSYLSKNWLRQPVFIQSFAPTSLVYISSKTDLPKILLIDEVDIPTQDTNQSYWEITSDNYLNYIKQYVVGIGPWKDTLVPVVNNYMITPTNLVSRAHAHNLQVHPYTYRNENCFLHFNFSQDPYMEYDYWINKVGIDGLFTDFTGSLHHFQEWTSKHQGDDDDYDAEDGNDITASKLLHKIALLISSYK* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00966 400 CDD GDPD_ScGlpQ1_like 44 355 - -
Lapu3g00966 400 SUPERFAMILY PLC-like phosphodiesterases 44 359 IPR017946 GO:0006629|GO:0008081
Lapu3g00966 400 FunFam Glycerophosphodiester phosphodiesterase GDPD5 42 361 - -
Lapu3g00966 400 Pfam Glycerophosphoryl diester phosphodiesterase family 49 356 IPR030395 GO:0006629|GO:0008081
Lapu3g00966 400 ProSiteProfiles GP-PDE domain profile. 44 362 IPR030395 GO:0006629|GO:0008081
Lapu3g00966 400 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 40 371 - -
Lapu3g00966 400 Gene3D Phosphatidylinositol (PI) phosphodiesterase 42 361 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00966 Lapu-Chr3 10474059 10478200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00966 16 366 Acyl Lipid Metabolism Gene Families AT5G08030 75.783 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00966 K01126 - gmx:100778145 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00966 3 10474059 10478200 Lapu3g00966 3 10474059 10478200 ECH