Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00964 ATGGCAATGCCGGAAACCATCCCTCTGACTACTCCCAGTGCTCAAGTTGTTGGCAATGCCTTTGTGGAGCAATATTATCACATTCTGCACCAATCTCCGAACTTGGTGCACAGGTTTTATCAGGATTCAAGTTTCTTAACCAGATCAGACAACAATGGTGTGATGACAACTGTGACAACTGTACAAGAAATCCATGAAAAGATTATTTCCCTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCGCATAAGGGAGGTGTGATAGTTTTAGTAACTGGATGCTTGACTGGGAAGGATAATGTGAGAAGGAAGTTCTCTCAGACATTCTTTCTGGCTCCACAAGAAAAAGGATATTATGTCTTAAATGATGTCTTTAGGTACACTGAGGTGAATGACGTGCCACAGTTAAATTCTGCCTCAGTAAATGTCATCAGTGAAAATGCTGAGACAGTGCATGAGCCAGAATCAGAGGAAACACATGCTCCCAAACATCTTGTGGAAGACACTGCAACTTCAGCTTTGGCAGAGGATGAAAACCATGATAATGGTGGTGAAGTTTATCATCCTGAAGATGAGGAAGATCAAGATGAGGAAGAAGGATCGGTTATTGATGAAGAGGTCGCTGAACCACCTACTGACTTAAGTCAGGATGATATTGTTACAGTTCATGATTCAACTTCTGCAGTTCAGGATGATGCACCAAGGAGATCATATGCATCCATTGTAATGAAAAGCAATGTAGCATCTGGCCAAGTCTACGTTCCCACCCGAGCTGCAAGAGTGGCATCTGCTAAATCCAGTGAACAATGGTCTACTACTGCCAAATCAACCCCTGTGCCTGAGTCATTTGCTCCTATTAGTGATAGTGCACCTGGGAGTAGTGACCTTCACGAAGAAGCTGAAGGTCACTCCATATATATAAGGAACTTGCCGTTTAGTGCTACAGTTGAGCAACTTGAAGAAGTCTTTAAGAAATTTGGTCCTATTAAACATGGTGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGTTCCGTGCACAGTGCACTTGAGGCTTCACCTATCACTGTTGGCGAGCGACAAGCTGTTGTTGAGGAAAAGAGAACTACTACACGAGTAAGCGGTAGTGGGAGAGGGAGGTATCCTTCAGGAAGAGGTGGATTCCGAAGCGACAGTTTCAGGGCACGCGGGAAATTTGGCGGTGGACGAGGTTATGGCAGAAATGATTTCAGAAACCAAGGAGAATTCTCAGGACAACCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGTGGGCGTGGTGGTGGACGTCAAGGTGTGGGGAACCGTAATTCCACACCATCCTCTTCAGCTGCATGA 1407 0.4421 MAMPETIPLTTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLTRSDNNGVMTTVTTVQEIHEKIISLNYEDYTAEIKTADAQESHKGGVIVLVTGCLTGKDNVRRKFSQTFFLAPQEKGYYVLNDVFRYTEVNDVPQLNSASVNVISENAETVHEPESEETHAPKHLVEDTATSALAEDENHDNGGEVYHPEDEEDQDEEEGSVIDEEVAEPPTDLSQDDIVTVHDSTSAVQDDAPRRSYASIVMKSNVASGQVYVPTRAARVASAKSSEQWSTTAKSTPVPESFAPISDSAPGSSDLHEEAEGHSIYIRNLPFSATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSVHSALEASPITVGERQAVVEEKRTTTRVSGSGRGRYPSGRGGFRSDSFRARGKFGGGRGYGRNDFRNQGEFSGQPRSSQRPNQNGGGRGGGRQGVGNRNSTPSSSAA* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00964 468 MobiDBLite consensus disorder prediction 181 209 - -
Lapu3g00964 468 MobiDBLite consensus disorder prediction 271 295 - -
Lapu3g00964 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 368 IPR000504 GO:0003723
Lapu3g00964 468 FunFam Ras GTPase-activating protein-binding protein 1 297 424 - -
Lapu3g00964 468 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Lapu3g00964 468 CDD RRM_SF 311 368 - -
Lapu3g00964 468 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Lapu3g00964 468 MobiDBLite consensus disorder prediction 428 447 - -
Lapu3g00964 468 MobiDBLite consensus disorder prediction 271 306 - -
Lapu3g00964 468 Gene3D - 6 137 - -
Lapu3g00964 468 MobiDBLite consensus disorder prediction 382 468 - -
Lapu3g00964 468 SUPERFAMILY RNA-binding domain, RBD 305 413 IPR035979 GO:0003676
Lapu3g00964 468 FunFam Nuclear transport factor 2 family protein 8 137 - -
Lapu3g00964 468 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 438 IPR039539 -
Lapu3g00964 468 SUPERFAMILY NTF2-like 13 133 IPR032710 -
Lapu3g00964 468 MobiDBLite consensus disorder prediction 194 209 - -
Lapu3g00964 468 Gene3D - 301 390 IPR012677 -
Lapu3g00964 468 SMART rrm1_1 310 381 IPR000504 GO:0003723
Lapu3g00964 468 CDD NTF2 13 135 IPR018222 -
Lapu3g00964 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 385 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00964 Lapu-Chr3 10450659 10459007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00964 K24983 - gmx:100801253 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00964 3 10450659 10459007 Lapu3g00964 3 10450659 10459007 ECH