Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00960 ATGAGGTGGGAAAAGGTTGAGGTGAAGGCGATAGGCACAGAGGGTGGTGGAGGTGGAAATGAGGTGTATGGGCCAGGGAAGAGGTGGGGTCACACCTGCAACGCCGTCAAAGGTGGCAGACTTGTCTATGTCTTCGGTGGTTACGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTTGACACTGTGAAGCAGAGTTGGAGCCAACCCACTCTGAAAGGCTCCCCACCTACTCCTAGGGACAGCCACACTTGCACAGCCATTGGTGATAATCTGTTTGTGTTTGGGGGTACAGATGGGATGAACCCTCTCAAGGATTTGCACATATTAGACACTTCATTGCATACATGGATTTCTCCTACCATAAGAGGAGAAGGGCCACCAGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGAAAACGCCTATTCATCTTTGGTGGTTGTGGAAAATCTGCAGATAGTAATAATGAAGTCTACTACAATGATCTTTACATATTAAATACAGAGACATTTGTTTGGAAGTGTGCTACAACATCAGGCACTCCACCATCTCCTCGTGATAGCCACTCGTGTTCATCTTGGAAAAATAAAATTATTGTAGTAGGAGGTGAAGATGGGCATGATTATTACTTGTCTGATGTCCATATCCTTGATACTGATACTTTAATCTGGAGGGAACTGAGAACATCAGGCCAATTGTTGCCTCCTCGAGCTGGTCATTCGACTGTTTCTTTTGGCAAGAACTTATTTGTTTTTGGGGGATTTACAGATGCCCAAAATCTATACAATGACCTTCATATGCTTGACATTGTTGGGATTCCTCATATCATCTTTCATTTCTTATTGACTGTAGACACTGGTGTTTGGACAAATGTTTCATCTGCAACCAATGGTCCTTCTGCTAGATTTTCTGTGGCTGGTGACTGTTTAGACCCTTTTAAGGGTGGTGTTCTTGTATTCATAGGTGGTTGTAATAAAAGTCTTGAGGCCCTGGATGATATGTATTACCTATATACAGGGATTGCTCGGGAAAGTGAACAGAGACCAGAGAAGTTATCTTTAAGGAAGCAATTGAAATTGAAGTGCCAAGAACAAAATCCCAATCCTAGCCACAATCAAGTTCTAGTAAGATATGGCGTGGGTTCTGATATGGGCCAGATCATGTCAGTGTTGAATTATAGCCAGCCAAGTAGGCTGAATATCCCAGTAAACCAATCCCTACCTCCTGGAAAGAAAATGTTTGAAGCCAAGGTCACTGAAAACATTTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAATTCTGTTTTTAAACAAGCCAAACTCTCTGTACCCAGCTGCTCATACTCCCAGTAGGAAAAGGACTCTGGGTGAAATTGATAGTGTTGTCTCGAATGGTGTACACACTAACCAATTAAAGACTCCTAAAGTACTCGAGCAAAATCAAATGGAAAACCAAGAAGCATTTCGTGGAGACATTCCAGAATCTCATGAACACCGCACTGAATCCATTGCAGTGGTAATGTCAAGTAACCCAATGACTGCCAATGCTTCTGATACCCATAAGGTTTCTGCCAACCCAGAACCAGAAGCTGCTGCTTTGAATCGAAATGATGAAAAAGATGAAACGCCCATATCCTTAAGTGGAGACTTGAAAAAAGATGGCGCAAATGATGTGACTAGTTCCAAAGATGAGGTGGAAACAAATGATCAAACAAATGTGCCAATTTCCAACTTTGAAGTTACAAGATATGATACAAAATTTGATGCTCCAAATTACAACACTGAATTTCTGAATCCTGCTGCATCTGAGAGTGCGTTGTGCCTGTCAAATCAAGGTATGAACTACTATTCCAAAAATTTAAACTGTTAG 1893 0.4205 MRWEKVEVKAIGTEGGGGGNEVYGPGKRWGHTCNAVKGGRLVYVFGGYGKDNCQTNQVHVFDTVKQSWSQPTLKGSPPTPRDSHTCTAIGDNLFVFGGTDGMNPLKDLHILDTSLHTWISPTIRGEGPPAREGHSAAVVGKRLFIFGGCGKSADSNNEVYYNDLYILNTETFVWKCATTSGTPPSPRDSHSCSSWKNKIIVVGGEDGHDYYLSDVHILDTDTLIWRELRTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLHMLDIVGIPHIIFHFLLTVDTGVWTNVSSATNGPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLRKQLKLKCQEQNPNPSHNQVLVRYGVGSDMGQIMSVLNYSQPSRLNIPVNQSLPPGKKMFEAKVTENISEGYTIETVIDGKPLRGILFLNKPNSLYPAAHTPSRKRTLGEIDSVVSNGVHTNQLKTPKVLEQNQMENQEAFRGDIPESHEHRTESIAVVMSSNPMTANASDTHKVSANPEPEAAALNRNDEKDETPISLSGDLKKDGANDVTSSKDEVETNDQTNVPISNFEVTRYDTKFDAPNYNTEFLNPAASESALCLSNQGMNYYSKNLNC* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00960 630 Gene3D - 2 151 IPR015915 GO:0005515
Lapu3g00960 630 Pfam Galactose oxidase, central domain 237 271 - -
Lapu3g00960 630 Pfam Galactose oxidase, central domain 186 232 - -
Lapu3g00960 630 SMART kelc_smart 198 248 IPR006652 GO:0005515
Lapu3g00960 630 SMART kelc_smart 92 141 IPR006652 GO:0005515
Lapu3g00960 630 SMART kelc_smart 41 91 IPR006652 GO:0005515
Lapu3g00960 630 SUPERFAMILY Galactose oxidase, central domain 24 271 IPR011043 -
Lapu3g00960 630 MobiDBLite consensus disorder prediction 521 576 - -
Lapu3g00960 630 Pfam Galactose oxidase, central domain 40 89 - -
Lapu3g00960 630 MobiDBLite consensus disorder prediction 540 555 - -
Lapu3g00960 630 Pfam Kelch motif 128 172 - -
Lapu3g00960 630 Gene3D - 152 407 IPR015915 GO:0005515
Lapu3g00960 630 PANTHER KELCH REPEAT DOMAIN 2 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00960 Lapu-Chr3 10388200 10393668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00960 55 328 Acyl Lipid Metabolism Gene Families AT3G05420 28.522 6.92e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00960 - - gmx:100820222 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00960 3 10388200 10393668 Lapu3g00960 3 10388200 10393668 ECH