Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00950 ATGCGACGACGGGCTGCCGATTATCGGCGCCCGGTTCGACGGAGGTTTTCATATTGGATCTGGCTTCTCCTCGCCTTCTCCTCTATCATTGCTCTCCTTCTCTTCCTTCTCCAACACAACCACCAACACCAAGATCCGCATCATTATCCTTTGCCGGAGAGAAATGCAAAAGTCGAACATTTTGCTAAGGATAGTTTTAATTTTACTGAAGAGATGTTAAGTGTATCGTCATTTTCACGGCAGTTAGCAGAACAAATGATTCTGGCCAAAGCTTATGTGGTTATTGCCAAAGAACATAACAATCTTCATCTTGCCTGGCAGCTAAGCTCAAAGATCAGAAATTGCCAGCTTTTGCTTTCCAAAGCTGCCATCACTGGCAAGCCCATCACGTTGGAGGAAGCAGAACCAATTATTAAAAGCCTTTCTCTTCTAATGTTGAAGGCACAAGATATCCATTATGACATTGCAACCACAATAGTAACCATGAAATCGCATATTCAAGCTCTAGAAGAGCGAGCCAATGCAGCAATAGTTCAAAGCACCGTGTTTGGTCAAATAGCAGCCGAAGCAGTGCCTAAGAGTCTTCATTGCCTAAATGTGAAACTCATGTCTGATTGGCTAAGGATACCATCTCTGCAGGAACTCTCAGACGAGAGGAAAAACTCACCACGGCTTGTGGACAACAATCTATATCATTTCTGCATATTTTCAGATAATGTACTGGCAACATCTGTAGTTGTAAACTCAACTGTCTCCAATGCTGACCATCCAAAGCAATTGGTCTTTCACATTGTCACTAATGGAGTCAATCACGGGGTAATGCTAGCATGGTTCTTACTTAATGACTTTAAAGGAGCCACCATAGAGATACAGAACATTGAGGAGTTTCATTGGTTGAATGCATCATATTCTCCTCTTGTCAAGCAGCTCCTCAATCCTGATTCAAGAACCTTCTATTTTGGAGCATATCAGGATTTAAATGTTGAACCCAAAATGCGGAATCCCAAGTATCTGTCTTTATTGAATCATCTTCGGTTTTACATCCCAGAGATTTATCCACAACTCGAGAAGGTTGTCTTCCTGGATGATGACCTTGTTGTCCAGAAGGATCTGACCCCCCTTTTCTCTCTGGATTTGCATGGGAATGTGAATGGTGCTGTTGAGACTTGTCTGGAAGCATTTCATCGATACTACAAGTATCTCAACTTCTCAAATTCGGTTATTAGCACGAGATTTGATCCGCAGGCATGTGCATGGGCATTTGGTATGAACATTTTTGACTTGGTTGCATGGAGGAAGGCAAATGTGACCACAAGATATCACTATTGGCAAGAGCAGAATGCTGATGGGACACTCTGGAAGCTGGGGACACTTCCTCCTGCTCTTCTGTGTTTTTATGGTTTAACAGAGCCACTTGACAGAAGATGGCATGTTTTAGGATTGGGTTATGACCTAAATATTGACAATCGCCTCATTGAAAGTGCGGCAGTTATTCACTTCAACGGGAACATGAAGCCATGGTTGAAGTTAGCCATAGGCAGGTACAAACCACTATGGGACAAATTATTTTATACTCATGATCCGTGGTTGCCTAAATGTAGAGTCAGAAGTAGAATTTTTTTACTTTGCTAG 1632 0.4234 MRRRAADYRRPVRRRFSYWIWLLLAFSSIIALLLFLLQHNHQHQDPHHYPLPERNAKVEHFAKDSFNFTEEMLSVSSFSRQLAEQMILAKAYVVIAKEHNNLHLAWQLSSKIRNCQLLLSKAAITGKPITLEEAEPIIKSLSLLMLKAQDIHYDIATTIVTMKSHIQALEERANAAIVQSTVFGQIAAEAVPKSLHCLNVKLMSDWLRIPSLQELSDERKNSPRLVDNNLYHFCIFSDNVLATSVVVNSTVSNADHPKQLVFHIVTNGVNHGVMLAWFLLNDFKGATIEIQNIEEFHWLNASYSPLVKQLLNPDSRTFYFGAYQDLNVEPKMRNPKYLSLLNHLRFYIPEIYPQLEKVVFLDDDLVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSVISTRFDPQACAWAFGMNIFDLVAWRKANVTTRYHYWQEQNADGTLWKLGTLPPALLCFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGRYKPLWDKLFYTHDPWLPKCRVRSRIFLLC* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00950 543 FunFam Hexosyltransferase 233 529 - -
Lapu3g00950 543 Pfam Glycosyl transferase family 8 235 510 IPR002495 GO:0016757
Lapu3g00950 543 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 533 IPR029044 -
Lapu3g00950 543 CDD GT8_like_1 231 521 - -
Lapu3g00950 543 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 233 527 IPR029044 -
Lapu3g00950 543 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 63 534 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00950 Lapu-Chr3 10254320 10258488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00950 1 533 Glycosyltransferase AT2G20810 54.461 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00950 K13648 - gmx:100798878 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00950 3 10254320 10258488 Lapu3g00950 3 10254320 10258488 ECH