Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00941 ATGTCACGGGCTCGCATTGCCCTCCACCGCTTCCGCCATAGCTACACAGCATTATCGTCAATCACCTCATGCTCATCTGCAGTTACACGCTTTCAATTCCAATGTCCCCAACAATATCTCACGCGCGCATCTCCCCCTTTTCACTTTCACTCCTGTTATTTTTCGTCTGTCCCGAACCAAGTCTTGGACGGTGGTGTCGAGAATTATCCAAGTGGAGACTTTGATTTCAAACCCCACACTGGCTGGAAAAAATTCATCGTCAAGCTCAAGATGCTAACGGCCTTACCCTGGCATCGTCTCCAGTACGGCACTGTTTTGACAATCAAGTTGCGCGGCCAGATATCGGATCAGCTGAAGAGTAGGTTCTCTCGGGGATTATCTCTGCCTCAAATATGTGATAATTTCTTGAAGGCAGCTTATGATCCTCGAATTTCTGGTATCTATCTCCACATTGATATTTTAAATTGCGGCTGGGCAAAGGTTGAAGAAATTCGAAGGCACGTCTTCAATTTCAGAAAATCAGGAAAATTTATTGTGGCTTATGTCCCTTCATGTCGAGAAAAAGAATACTATATTGCAAGTGCGTGTGAAGAAATATATGCCCCTCCAAGTGCTTATTTTTCTTTGTTTGGATTGACTGTTCAGGCTCCATTCTTCAGAGGTGTTTTAGAGAATCTTGGAATTGAACCAGAAGTGGAAAGGATTGGGAAGTACAAAAGTGTGGGAGATCAACTTACCCGGAGAACCATGTCTGAAGATCATCATGAGATGCTTACTGCATTGCTTGACAATATCTACACACATTGGTTGGACAAAGTCTCTGCTGCTAGAGGAAAGAAAAGAGAAGATGTTGAAAACTTCATAAATAAAGGTGTTTATCAAGTAGAGACACTTAAAGAAGAGGGCTTCATATCAGATATAATCTATGATGACGAGGTTATCACTAGGTTGAAGGAGAGACTTCAAGTAAAAACAAATAAAAATCTGCCTATGGTTGATTACAGAAAATACTCTGGAGTTCGGAAATCAACTCTTGGACTATCAGATGGTAAAGGCTTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGTCGTATTGAGAGTCCACTAGGTGGCCGTAGCTCAGGTATCATTGGAGAGAAGTTAATTGAGAAGATACGCAGTGTTAGAGAGTCAAATAAATATAAGGCTGCTATTATACGAATTGACAGTCCAGGAGGGGATGCTCTGGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCGAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAGCTTAACCTTGGGAAACTCTATGAGAAGATTGGCTTCAACAAAGAAATTATATCAAGGGGTAGATATGCTGAGCTGCGGGCAGCTGAACAGCGTTCTTTTAGACCAGATGAAGCAGAGCTATTTTCCAAGTCTGTTCAGCATGCTTATAAACAATTTCGAGATAAAGCAGCCTTTTCTCGATCTATGACTGTAGACAAGATGGAAGAGGTTGCACAGGGGAGGGTTTGGACCGGTAAGGATGCAGCTTCTCATGGTTTGATTGATGCTATTGGTGGCCTTTCTCGAGCTGTTGCCATAGCAAAATTGAAGGCCGGTATACCTCAAGATAGACAGGTTACTGTTGTGGAGCTCTCAAGACCCAGCCCATCTCTACCCGAGATTTTAAGTGGTCTAGGTAATTCTCTCGTTGGAGTCGACAGAACTTTAAATGAATTACTACACGACTTGACATTTTCCCATGGAGTCCAAGCACGGATGGACGGAATCATGTTTGAGAAATTGGAAGGATATCCGTACGCCAACCCCATTTTGTCATTGATAAAAGATTATCTTAGTTCCCTGTAG 1965 0.43 MSRARIALHRFRHSYTALSSITSCSSAVTRFQFQCPQQYLTRASPPFHFHSCYFSSVPNQVLDGGVENYPSGDFDFKPHTGWKKFIVKLKMLTALPWHRLQYGTVLTIKLRGQISDQLKSRFSRGLSLPQICDNFLKAAYDPRISGIYLHIDILNCGWAKVEEIRRHVFNFRKSGKFIVAYVPSCREKEYYIASACEEIYAPPSAYFSLFGLTVQAPFFRGVLENLGIEPEVERIGKYKSVGDQLTRRTMSEDHHEMLTALLDNIYTHWLDKVSAARGKKREDVENFINKGVYQVETLKEEGFISDIIYDDEVITRLKERLQVKTNKNLPMVDYRKYSGVRKSTLGLSDGKGLIAIIRASGSIRRIESPLGGRSSGIIGEKLIEKIRSVRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKLNLGKLYEKIGFNKEIISRGRYAELRAAEQRSFRPDEAELFSKSVQHAYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAASHGLIDAIGGLSRAVAIAKLKAGIPQDRQVTVVELSRPSPSLPEILSGLGNSLVGVDRTLNELLHDLTFSHGVQARMDGIMFEKLEGYPYANPILSLIKDYLSSL* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00941 654 SUPERFAMILY ClpP/crotonase 355 559 IPR029045 -
Lapu3g00941 654 CDD S49_SppA_67K_type 106 319 IPR047217 -
Lapu3g00941 654 Gene3D - 510 617 - -
Lapu3g00941 654 Gene3D - 348 499 - -
Lapu3g00941 654 Pfam Peptidase family S49 422 572 IPR002142 GO:0006508|GO:0008233
Lapu3g00941 654 Pfam Peptidase family S49 171 323 IPR002142 GO:0006508|GO:0008233
Lapu3g00941 654 CDD S49_Sppa_N_C 354 568 IPR047272 -
Lapu3g00941 654 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Lapu3g00941 654 SUPERFAMILY ClpP/crotonase 94 309 IPR029045 -
Lapu3g00941 654 NCBIfam signal peptide peptidase SppA 355 568 IPR004635 GO:0006508|GO:0008233
Lapu3g00941 654 PIRSF Protease_4_SppA 54 654 IPR004634 GO:0006465|GO:0008233|GO:0016020
Lapu3g00941 654 PANTHER PROTEASE 4 67 653 - -
Lapu3g00941 654 Gene3D - 244 339 - -
Lapu3g00941 654 Gene3D - 104 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00941 Lapu-Chr3 10143796 10153525 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00941 K04773 - gmx:100809623 1108.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00941 3 10143796 10153525 Lapu3g00941 3 10143796 10153525 ECH