Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00920 ATGCTACAAAGAGTAGTGCGATATTCCGCTCAACCATTCAGTCCTCCAACTTGCACAACACCACCATCACTTTCGCCAATTCAATTAATACTCACTTCTCCATCTTTCCCAATCCTCAAACAGCAATGCAGATTATCACGAAGAGAGCTCACAATCTTCAGCAACTCTTGCTTGCTACTTCTCTTGGGTACTCAGGCAGTGGATGGATCCAGCGCAAGAGCAGAAGCAGATGTTGCAAACACAGACAACAGTGATCAACCAGATGAGAAGAATGTGGTTTTAGCAGAAGAGGATGTTGCTAACGCAAGCAGCAGTGCTCAACCAGAAGAGAATCTGGTTTTGGCAGAAGATGTTGCTAACACAAGTAACAGTGAACAACAAGAAGAAAATTTGAATTTAGCAGAAGAAAATGCTACTAACACAAGTAACAGTGATCAACCAAATGAGAACCTGACTACAATTCCTAGCTGCACTGAAAGAAAAACTACCAAACAAGTATTCTTAGACATATCTATTGATGGTGAACCTGCTGGTCGCATTACTATAGGGCTTTATGGAGATGAGGTCCCTGCAGGAGTTGAAAGGTTCAGTAAGGTTGTAAGTGGAGCTGCAGGTATTAGCTACAGAAGAAAAGAGTTTGTCAAAATCATGCCCAATTATGTTCAACATGGTGGCCTTAGATCCTATGGGGTGGATGCTGAATTTTCTACGAGGACAGGTAGCAACTTGGGAGCTAATAGTCTAGTTCAGGAATGGGAGAGTGAGTATGAGAAATGTCCTGGGACTAAAAACGTGACTGGAAGTGTAGGCATTATTGTAAGAAACCCGTCAAAACCACCCCCAAAGATGAAGCTGGTTGCAAAGAAAGGGAAGCTTGAGATTGATCAAGAAGAAGTAGGTATTGATCCCAATGGTACAGAATTTGTCATAGCTACAAAGGACTCACCAGAATTGGATACATCGTCTCTGGTAATTGGAAGAGTGATAGGAGGCATGGAGGTTGTGCAGAGGATCGGTCAGGTTAAAACCGTACAGGAGAATACAGGGTCTCCATATTTTAGGGTGGCAAAGCTGATAGGAGACAAGAGAGCTGTTGTAGCAGAAAGAGGATTCAACCGCCCTTATTCAAAGGTCATTGTTACAAACTGCGGTTTAATGCAGTAA 1164 0.4278 MLQRVVRYSAQPFSPPTCTTPPSLSPIQLILTSPSFPILKQQCRLSRRELTIFSNSCLLLLLGTQAVDGSSARAEADVANTDNSDQPDEKNVVLAEEDVANASSSAQPEENLVLAEDVANTSNSEQQEENLNLAEENATNTSNSDQPNENLTTIPSCTERKTTKQVFLDISIDGEPAGRITIGLYGDEVPAGVERFSKVVSGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDAEFSTRTGSNLGANSLVQEWESEYEKCPGTKNVTGSVGIIVRNPSKPPPKMKLVAKKGKLEIDQEEVGIDPNGTEFVIATKDSPELDTSSLVIGRVIGGMEVVQRIGQVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVIVTNCGLMQ* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00920 387 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 167 385 IPR002130 GO:0000413|GO:0003755
Lapu3g00920 387 MobiDBLite consensus disorder prediction 120 157 - -
Lapu3g00920 387 SUPERFAMILY Cyclophilin-like 161 386 IPR029000 -
Lapu3g00920 387 Coils Coil 124 144 - -
Lapu3g00920 387 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 13 387 IPR044185 -
Lapu3g00920 387 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 168 346 IPR002130 GO:0000413|GO:0003755
Lapu3g00920 387 Gene3D - 154 387 IPR029000 -
Lapu3g00920 387 FunFam Peptidyl-prolyl cis-trans isomerase B 156 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00920 Lapu-Chr3 9938719 9940469 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00920 K03768 - gmx:100800469 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00920 3 9938719 9940469 Lapu3g00920 3 9938719 9940469 ECH