Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00907 ATGCGACAACTGGGCAGTGGATCAAATGCTCTTTCCAGTGTTAGTGTCAGCAGGAACATGTTTGAAACAATTGCTCGAGATCTCCTTTTGGATAGAACGGACCATTCTCTTGAGCTCTATGAAGGTAGTGGTTCCAATTGGAGACTGGTCAAAAGTGGAACACCTGGTAATATTGGTAGTTTTGAAGAAGTTCTGTTTGCTAACAGTGAAATGCAAGATTCTCCTGTTGTTGTTGCTTTGTCACTTAACTTCCGTGAAAATGGTTGCACCATTGGGTTAGGATTTGTGGATCTAACTAAGAGAGTACTTGGGATGACTGAATTCCTTGATGACAGTCACTTCACAAATGTGGAATCTGCATTGGTTGCACTTGGATGTAAAGAGTGCCTTCTGCCCGTAGAGTGTGCCAAATCTACCGAAAACAGAATGTTGTGTGATGTGTTGACTAAATGTGGTGTGATGTTAACTGAGAAAAAGAAATCTGAATTTAAAGCCAGGGATCTGGTGCAGGATCTTGGCAGGCTTGTTAAAGGTCCTATTGAACCAGTTCGAGATTTAGTGTCTGGATTTGAATTTGCTCCTGGTGCTTTGGGGGCATTACTATCTTATGCAGAGTTACTGGCAGATGAAAGCAATTATGATAATTATACCCTTCGTAGGTACAATATTGACAACTATATGAGGTTAGATTCTGCAGCCATGAGGGCACTTAATGTCCTTGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGGACTTGTACTGCTGGAATGGGAAAACGCTTATTGCACATCTGGCTTAAACAGCCGTTAGTAGATGTGGCAGAAATTAATTCCAGACTGGACATTGTACAAGCATTTGTAGAGGACACTGTGCTTCGCCAGGATCTGAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGACTGATGCACAATCTGCAGAAGCGACGAGCTGGTCTGCAACATATTGTTAAACTTTATCAGTCAAGTATTAGACTACCTTACATTAAAAGTGCTTTGGAAGTATATGATGGACAATTTTCCTCAATGATGAGGAGTAGGTATTTGGAACCGCTTGAATTATGGACTGATGATGAGCACCTGAACAAATTCATTGGGCTTGTAGAAGCATCTGTTGACCTTGATCAACTTGAGAACAGGGAATACATGATTTCTCCGAGCTATGACTCTACACTAGCTAACCTAAAGGAACAGCGAGAATTACTAGAGAGCCAAATACATAACTTGCATAGACAAACCGCTGATGATCTTGATCTTCCTATAGATAAGGCATTGAAGTTAGACAAGGGTACACAATTTGGACATGTTTTCAGAATCACAAAGAAGGAGGAGCCTAAAATAAGGAAGAAGCTCAATACCCAGTTTATTGTACTGGAAACCCGGAAAGATGGAGTGAAATTTACCAACACTAAACTCAAAAAACTAGGGGATCAATATCAGCAAATTCTTGAGGAGTACAAAAGTTGTCAAAAGAAGTTAGTTGATAATGTAGTTCAAACTGCGACAACTTTTTCTGAGGTGTTTGAATCTTTAGCGAAAATAATTTCTGAATTGGATGTATTACTGAGCTTTGCTGATTTGGCTTCTAGTTGCCCTACTCCCTACACAAGGCCTGATATCACTCCATCGGACGAAGGAGATATTATTTTAGAAGGCTGCAGACACCCTTGTGTAGAAGCCCAAGACTGGGTGAATTTTATACCAAATGATTGTAAGCTTGTCAGAGGGGAAACTTGGTTTCAAATAATAACGGGGCCTAACATGGGTGGTAAATCAACATTCATCCGGCAGGTGGGTGTGAATATTTTGATGGCACAAGTTGGTTCATTTGTTCCTTGTGACAAAGCCAGTATATCTATTCGTGATTGTATTTTTGCCCGTGTGGGTGCTGGTGACTGCCAGCTACGTGGTGTTTCTACCTTCATGCAAGAAATGCTTGAAACTGCATCAATATTAAAAGGAGCTACTGAAAAGTCCTTGATAATCATTGATGAGTTGGGGCGTGGGACATCAACTTATGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCATATTGTTGAAGTTATCAAAGCACCTACTTTGTTTGCCACCCACTTTCACGAACTGACTGCTTTAGCCCTTGAAAATGTAAGCAACGATCCACAGAAGCAAATTGTTGGCGTGGCAAACTATCATGTTAGTGCGCATATTGACTCGTCAACTCGAAAGCTAACTATGCTGTACAAGGTTGAACCTGGAGCGTGTGATCAGAGCTTTGGCATTCATGTTGCCGAGTTTGCAAACTTCCCTGAAAGTGTTGTTACCTTAGCTAGAGAAAAGGCGGCTGAATTAGAAGACTTTTCCTCCCCTGCTGCATCCTTAACTGATACTACGCTGGAGGTGGGTTCTAAACGTAAGAGAGTATTTGAATCCGATGACATGTCTCGAGGGTCTGCAAGGGCTCGGCAATTTCTCGAAGCATTTGTTGCTTTGCCACTAGACACCATGGATAAAATGCAAGCTTTGCAAGAAGTAAGGAAATTAACAGATACTTTGGAGAAGGATGCAGGAAACTGTCATTGGCTACAACAATTCTTGTGA 2625 0.4122 MRQLGSGSNALSSVSVSRNMFETIARDLLLDRTDHSLELYEGSGSNWRLVKSGTPGNIGSFEEVLFANSEMQDSPVVVALSLNFRENGCTIGLGFVDLTKRVLGMTEFLDDSHFTNVESALVALGCKECLLPVECAKSTENRMLCDVLTKCGVMLTEKKKSEFKARDLVQDLGRLVKGPIEPVRDLVSGFEFAPGALGALLSYAELLADESNYDNYTLRRYNIDNYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHIWLKQPLVDVAEINSRLDIVQAFVEDTVLRQDLRQHLKRISDIERLMHNLQKRRAGLQHIVKLYQSSIRLPYIKSALEVYDGQFSSMMRSRYLEPLELWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSTLANLKEQRELLESQIHNLHRQTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDQYQQILEEYKSCQKKLVDNVVQTATTFSEVFESLAKIISELDVLLSFADLASSCPTPYTRPDITPSDEGDIILEGCRHPCVEAQDWVNFIPNDCKLVRGETWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENVSNDPQKQIVGVANYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSSPAASLTDTTLEVGSKRKRVFESDDMSRGSARARQFLEAFVALPLDTMDKMQALQEVRKLTDTLEKDAGNCHWLQQFL* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00907 874 Gene3D DNA repair protein MutS, domain I 1 54 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 45 798 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lapu3g00907 874 Gene3D - 550 869 IPR027417 -
Lapu3g00907 874 FunFam DNA mismatch repair protein 55 224 - -
Lapu3g00907 874 Pfam MutS family domain IV 402 499 IPR007861 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 FunFam DNA mismatch repair protein 227 444 - -
Lapu3g00907 874 SUPERFAMILY DNA repair protein MutS, domain II 88 242 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 Coils Coil 303 323 - -
Lapu3g00907 874 Coils Coil 486 506 - -
Lapu3g00907 874 SMART mutATP5 592 790 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 Pfam MutS domain II 76 216 IPR007860 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 Gene3D - 227 455 - -
Lapu3g00907 874 Gene3D - 456 549 - -
Lapu3g00907 874 ProSitePatterns DNA mismatch repair proteins mutS family signature. 673 689 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 Coils Coil 406 426 - -
Lapu3g00907 874 PIRSF MSH2 1 874 IPR011184 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 Pfam MutS domain III 233 539 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 Pfam MutS domain V 595 793 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 FunFam DNA mismatch repair protein MSH2 446 549 - -
Lapu3g00907 874 CDD ABC_MSH2_euk 563 793 IPR032642 GO:0005524
Lapu3g00907 874 SMART DNAend 247 575 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 FunFam DNA mismatch repair protein MSH2 550 870 - -
Lapu3g00907 874 Gene3D MutS, connector domain 55 224 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lapu3g00907 874 SUPERFAMILY DNA repair protein MutS, domain III 230 544 IPR036187 -
Lapu3g00907 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 794 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00907 Lapu-Chr3 9798335 9807261 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00907 K08735 - gmx:100792272 1629.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00907 3 9798335 9807261 Lapu3g00907 3 9798335 9807261 ECH