Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00903 ATGTTGTTGCATGCTGAAGTTGAAAAGAAATCACCTCCACATCCTGAGAGGCCAGATCGTCTTCAAGTCATTGCTGCTAGTCTTGCTAGAGCTGGCATATTTCCTGGAAAATGCTATTCAATTCCTGCTAGAGAAATCACACCAGAAGAACTTATTACGGTTCATTCTTTGGAGCATATTGAGTCCGTGGAAGTTACAACTGAATCACTCTCTAGTTATTTCACTCCAGACACATATGCAAATCAGCATTCAGCACTTGCTGCTAGGTTGGCCGCTGGGTTATGTGCTGATCTGGCATCAGCAATTGTCTCCGGACGTGCCAAAAATGGATTTGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACAGGCAATGGGGTTCTGCCTTCACAATAATGCTGCTGTGGCAGCATTGGCTGCTCAGGCTGCAGGGGCTAGGAAGGTTCTAATTTTAGATTGGGATGTTCATCATGGAAACGGGACACAAGAAATATTTGAACAGAACAAATCGGTCTTGTATATATCATTGCATAGACACGAGGGAGGAAAGTTTTATCCTGGTACTGGAGCTGCTGAAGAGGTTGGTAGTATGGGTGCTGAAGGGTACTGTGTGAATATTCCGTGGAGTCGAGGAGGAGTTGGTGACAATGACTACAATTTTGCATTTCAGCATGTTGTCCTTCCTATAGCTTCTGAGTTTAATCCAGATTTTACCATAGTATCCGCTGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGCGATATTACTCCCTCTGGCTATGCACGCATGACGCATATGTTGAATGCCCTCTCTGGTGGAAAATTGCTTGTTATTCTCGAGGGGGGCTATAATCTTCGATCTATATCATCTTCTGCGACTGCAGTAATCAAGGTATTATTGGGTGAGAATCCTGGATGTGAACTGGAAAATAGTTTCCCTTCCAAAGCTGGCCTGCTAACCGTTCTGGAAGTCCTCAAAATTCAGATGAAGTTTTGGATTTCCTTGGGTCCGATTTTTGTGAATTTGGAGTCACAGTGGAGGATGTACCGTTTCGAAAAAAAAAGAAAACAGATTAAGAAACGACGCCGACTTTTGGTTCCGATGTGGTGGAAATGGGGACGAAAAGGTTCCCTATTCTATTTCTTGAACGGTCGTCTTCATGAAAAATCAAAGTGA 1188 0.4394 MLLHAEVEKKSPPHPERPDRLQVIAASLARAGIFPGKCYSIPAREITPEELITVHSLEHIESVEVTTESLSSYFTPDTYANQHSALAARLAAGLCADLASAIVSGRAKNGFALVRPPGHHAGVRQAMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAEEVGSMGAEGYCVNIPWSRGGVGDNDYNFAFQHVVLPIASEFNPDFTIVSAGFDAARGDPLGCCDITPSGYARMTHMLNALSGGKLLVILEGGYNLRSISSSATAVIKVLLGENPGCELENSFPSKAGLLTVLEVLKIQMKFWISLGPIFVNLESQWRMYRFEKKRKQIKKRRRLLVPMWWKWGRKGSLFYFLNGRLHEKSK* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00903 395 FunFam Histone deacetylase 15 1 359 - -
Lapu3g00903 395 PANTHER HISTONE DEACETYLASE 9-RELATED 1 341 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Lapu3g00903 395 PRINTS Histone deacetylase superfamily signature 149 164 IPR000286 -
Lapu3g00903 395 PRINTS Histone deacetylase superfamily signature 116 139 IPR000286 -
Lapu3g00903 395 PRINTS Histone deacetylase superfamily signature 237 247 IPR000286 -
Lapu3g00903 395 Pfam Histone deacetylase domain 14 302 IPR023801 -
Lapu3g00903 395 Gene3D Histone deacetylase domain 1 341 IPR037138 -
Lapu3g00903 395 SUPERFAMILY Arginase/deacetylase 2 318 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00903 Lapu-Chr3 9765588 9774237 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00903 - - gmx:100804724 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00903 3 9765588 9774237 Lapu3g00903 3 9765588 9774237 ECH