Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00577 ATGGCCACCCTCGACCCAATCCAAAACGGCACCACAAATCCCCTCCTGTCGGACAATCCCGACGCCGCCGAACCTCCATCAACCACCGCCGACGACCCCAATCCCGAGGTCGCCTCCGAGAAGCGGTGGCCGGGATGGCCCGGCCTCTGCGTGTTCCGCCTCATCGTGCCGGTCCTCAAAGTCGGAAGCATCATTGGCCGGAAGGGGGAGCTCATCAAGAAGACATGCGAGGAAACGAAAGCTCGCATTCGTGTCCTCGACGGAGCGGTTGGCACCCCCGATCGAATCGTACTCATATCAGGGAAGGAGGAGCCAGAGGCACCACTTTCTCCAGCAATGGATGCTGTCATAAGGATTTTTAAACGTATCTCAGGGTTGTCTGAAGCTGATGGCGAGAATAAAGCAGCAGGGCTTGCATTTTGTTCCGTTCGTTTACTGGTGGCCTCAACGCAGGCTATCAATTTGATTGGAAAGCAGGGTTCATTAATTAAATCTATACAAGAAAATACCAGTGCTTCTGTTAGAGTACTATCTGGAGATGAGGTTCCCTTTTATGCTGCTGCGGATGAGAGGATTGTTGACCTGCAGGGAGAAGCCATGAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGACCCCAGTGTTCTTCCCTTATTTGAGAAAAGTTACAATGCAACAATCTCCCAAGAGCGGCAAGTAGAATCTACTTGGGTTGACAAACCATCACTGCATAGTGCTTCACAACCTAGCATTGCAAATGATATTCCTCTTTCATCAAAAAGGGATTCTCTCTTTGCTGACCGTGAAAGCCATTTGGATTCATTGCTCCCTTCCTCCACAATGTCAATATATGGCCAAGATTCTTCACTTTCTAGTCTTCGTTCTTCAGCACTCAGTCGTTCCAGTGCTCCTCCTATTGTTACCACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATAATTGGCATACAAGGGACTAATATTGATTACATTCGCCGCACCAGTGGAGCAATATTGACTGTGCAGGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAGACAGCACAACAGTTGATTCAGGAAGTTATAAGTAGTCACAAAGAACCTGTCGCTAGTAATTACAGCAGGTTAGATACAGGTCTGAGGTCTTCTTATCCTCCGTTGGGCAGTTCGTCTTATTCGTCATCTTCCTTGTCGTCGCAACCTTACAGCGGGTATGGATCTTCTGGTCTAGGAGGCTATAGTACTTTCAGACTTTGA 1320 0.4841 MATLDPIQNGTTNPLLSDNPDAAEPPSTTADDPNPEVASEKRWPGWPGLCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTPDRIVLISGKEEPEAPLSPAMDAVIRIFKRISGLSEADGENKAAGLAFCSVRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVPFYAAADERIVDLQGEAMKVLKALEAVVGHLRKFLVDPSVLPLFEKSYNATISQERQVESTWVDKPSLHSASQPSIANDIPLSSKRDSLFADRESHLDSLLPSSTMSIYGQDSSLSSLRSSALSRSSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISSHKEPVASNYSRLDTGLRSSYPPLGSSSYSSSSLSSQPYSGYGSSGLGGYSTFRL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00577 439 Gene3D K Homology domain, type 1 309 391 IPR036612 GO:0003723
Lapu3g00577 439 ProSiteProfiles Type-1 KH domain profile. 49 116 - -
Lapu3g00577 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 219 IPR036612 GO:0003723
Lapu3g00577 439 Gene3D - 50 216 - -
Lapu3g00577 439 ProSiteProfiles Type-1 KH domain profile. 140 209 - -
Lapu3g00577 439 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 38 409 - -
Lapu3g00577 439 Pfam KH domain 52 104 IPR004088 GO:0003723
Lapu3g00577 439 Pfam KH domain 319 381 IPR004088 GO:0003723
Lapu3g00577 439 Pfam KH domain 143 209 IPR004088 GO:0003723
Lapu3g00577 439 MobiDBLite consensus disorder prediction 1 41 - -
Lapu3g00577 439 CDD KH-I_PEPPER_rpt2_like 142 214 - -
Lapu3g00577 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 104 IPR036612 GO:0003723
Lapu3g00577 439 SMART kh_6 315 384 IPR004087 GO:0003676
Lapu3g00577 439 SMART kh_6 139 214 IPR004087 GO:0003676
Lapu3g00577 439 SMART kh_6 48 121 IPR004087 GO:0003676
Lapu3g00577 439 MobiDBLite consensus disorder prediction 1 24 - -
Lapu3g00577 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 312 385 IPR036612 GO:0003723
Lapu3g00577 439 ProSiteProfiles Type-1 KH domain profile. 316 379 - -
Lapu3g00577 439 CDD KH-I_PEPPER_rpt1_like 50 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00577 Lapu-Chr3 5901024 5907078 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00577 K21444 - gmx:100802089 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00577 3 5901024 5907078 Lapu3g00577 3 5901024 5907078 ECH
Lapu3g00577 3 5901024 5907078 Lapu9g00468 9 5146421 5157676 PCT