Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00416 ATGGAGGAAGTTAACGTTGTGGAAGCTAAGGATGGGACTGTCTCAGTAGCTTCTGCGTTTGCTGGTCACCAGGAAGTTGTGCAGGATACAGACCACAAATTTGTAAGAAAAGCTGTTGAAGAAGCATATAATGGGGTAGACTGTAAAGATGGAGGCCCATTTGGTGCTGTTATAGTTCGTAAGGGTGAAATAGTTGCTAGTTGCCACAACATGGTTCTTAGAAACACAGATCCAACTGCTCATGCTGAGGTGACAGCAATAAGAGAGGCATGTAAGCAGCTTAACCAAATAGAACTTTCAGACTGTGAAATATTTACTTCCTGTGAGCCTTGCCCCATGTGCTTTGGTGCAATTCACCTTTCTCGGATTAAGAGGTTAGTTTATGGAGCAAAGGCTGAGGCAGCAATTGCCATTGGGTTTGATGATTTTATTGCAGATGCACTGCGAGGTACTGGATTCTATCAGAAAGCAACATTGGAAATCAAAAGAGCTGATGGTAATGAAGCCATGATTGCTGAAGAGGTCTTTGAGAAAACAAAGACAAAATTCCAAATGTATTAG 561 0.4207 MEEVNVVEAKDGTVSVASAFAGHQEVVQDTDHKFVRKAVEEAYNGVDCKDGGPFGAVIVRKGEIVASCHNMVLRNTDPTAHAEVTAIREACKQLNQIELSDCEIFTSCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKATLEIKRADGNEAMIAEEVFEKTKTKFQMY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00416 186 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 81 118 IPR016192 GO:0008270|GO:0016787
Lapu3g00416 186 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 24 133 - -
Lapu3g00416 186 SUPERFAMILY Cytidine deaminase-like 24 144 IPR016193 GO:0003824
Lapu3g00416 186 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 143 IPR002125 -
Lapu3g00416 186 Gene3D Cytidine Deaminase, domain 2 22 185 - -
Lapu3g00416 186 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 129 IPR002125 -
Lapu3g00416 186 FunFam tRNA-specific adenosine deaminase 29 185 - -
Lapu3g00416 186 CDD nucleoside_deaminase 36 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00416 Lapu-Chr3 4207956 4210962 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00416 - - gmx:100500436 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00416 3 4207956 4210962 Lapu9g00331 9 3414063 3416881 PCT