Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00342 ATGGAAAATACGAAGGAGTTCGAGCACTTCGACGTGGTTTCAGACGATTCAGATCACCACTTTCTTGGTTCAAAGAACGGAAAATGGTTGAACGATTCAAAGAGCAAAGTGCACAAAACCATCGTGAAAGAGTGGAAGATTCTGGAGCAGAACTTGCCGGAATCAATATACGTGAGAGTGTACGAGCGAAGCATTGATCTAATGAGGGCTGTGATCGTAGGCGCCGCGGGTACACCATACCACGATGGCCTCTTCTTCTTCGACATCATGTTCCCTTCGGATTATCCGAGAAACCCTCCGAAGCTGTATTACCACTCGTTTGGGTACAGACACAACCCCAACCTGTACAAGAACGGGAAAGTGTGTCTGAGTCTGTTGAACACGTGGTACGGGAGAAAGAAAGAGAAGTGGGACCCATGTGAGTCCACGATGTTGCAAGTGTTGCTATCGATTCAAGCACTGGTTCTGAACGAGAAGCCGTTTTTCAACGAACCTGATGCTGTGCCTTCAGAGAAGAAGTCACGTGCGTACAACGAGAACGTGTTCCTCAGTACTTGCATCACCTCCTTCCACCTGCTTCAGCGGCCGCCGCGGAACTTCGAAGCCTTCGTCGGAGACCATTTTCGCCGCCGAGCGTTTCCGATTCTCGCGGCATGCGGCGAGTACGCGAGTGGGCGCGTGGGAGTTGGGTACTACGGTTGCGACATGCGTTTCTCGATGGTCCAAGTTTCGAGGGGTTTCAAGGAGCGCATGGTGGTGCTTTACCCTCGGCTTTTCGAAGCGTTTCGTCGGAATGGTGCTTCTTTGGAGGGTTTGGGACAACAGTTGGAGGTGGAGAGCCCAGAATCCCAAGACAAAAGCAGTGGAGTTTTCAAAAAGATAGTGGAAAAGATAAAAAAGGCTTTCAGATGGAGGAAATTTGGGAAGAACAAAATCAGCGAGATCGAGGGGATAAATCGTGGTATTGAAAGTGTTTGA 978 0.4969 MENTKEFEHFDVVSDDSDHHFLGSKNGKWLNDSKSKVHKTIVKEWKILEQNLPESIYVRVYERSIDLMRAVIVGAAGTPYHDGLFFFDIMFPSDYPRNPPKLYYHSFGYRHNPNLYKNGKVCLSLLNTWYGRKKEKWDPCESTMLQVLLSIQALVLNEKPFFNEPDAVPSEKKSRAYNENVFLSTCITSFHLLQRPPRNFEAFVGDHFRRRAFPILAACGEYASGRVGVGYYGCDMRFSMVQVSRGFKERMVVLYPRLFEAFRRNGASLEGLGQQLEVESPESQDKSSGVFKKIVEKIKKAFRWRKFGKNKISEIEGINRGIESV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00342 325 Pfam Ubiquitin-conjugating enzyme 41 181 IPR000608 -
Lapu3g00342 325 FunFam Putative ubiquitin-conjugating enzyme E2 38 1 265 - -
Lapu3g00342 325 SMART ubc_7 39 190 - -
Lapu3g00342 325 Gene3D Ubiquitin Conjugating Enzyme 1 245 IPR016135 -
Lapu3g00342 325 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 36 213 IPR000608 -
Lapu3g00342 325 CDD UBCc 38 185 IPR000608 -
Lapu3g00342 325 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 6 267 - -
Lapu3g00342 325 SUPERFAMILY UBC-like 32 197 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00342 Lapu-Chr3 3420292 3421269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00342 3 266 Miscellaneous Gene Families AT2G33770 51.825 6.31e-79 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00342 K10581 - gmx:100791343 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00342 3 3420292 3421269 Lapu3g00342 3 3420292 3421269 ECH