Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00335 ATGCCCATGTTTGAACCTGAGAGGTTGGAATCCAAAGAGAGACCCCTCGCAGTGAATTTGGACTTGGCGTTATACAGGGCGAAGCTTATGGCTAGAAGAAGCTTTCGATATGAAGAAGCAGAGGCATTGCTTCAAAAGTGTATAAGCTTTTGGCCTGAAGATGGTCGACCTTACGTGGTACTTGGAAAGATTTTGAGCAAGCAATCGAAAACAGGTGAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACGCAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTTGAAATGCAAATGGGAAATATCAGGAGAGCAAGAGAGTTGTTTGATGCTGCCACGGTTGCTGATAAGAAGCATGTTGCTGCTTGGCATGGATGGGCAGTTCTAGAGTTAAAGCAGGGAAATATAAAGAAGGCAAGGAGTCTACTCGGAAAAGGTCTTCAATATTGTGGACAGAATGAGTACATATACCAAACGCTTGCACTACTTGAAGCTAGAGCAAAGAGATATCAGCAGGCTCGCTATTTATTCAATCAGGCCACAAAGTGTAATCCTAATAGCTGTGCTAGTTGGCTTAGTTGGGCACAAATGGAGGTGGAACAGGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCTAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCGTTTTTGAAGCAAACGTTGGCAACATTGAAAAAGGAAGAAAACTTTTAAAGATAGGCCACACTCTAAATCCGAGGGATGCTGTTCTACTTCAATCTCTTGCTTTATTAGAATACCAACACTCAACTGCAAACCTTGCTCGGGTTTTATTCAGGAGAGCATCAGAGTTGAATCCAAGGCACCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAACATGAATACAGCCAGAGATTTATACCAGAAAACTCTATCAATTGATCAGAACAGTGAAACTGCTGCCAGATGTCTCCAGGCTTGGGGTGTTCTGGAGCAGAGGATTGGCAATCTTTCAGCAGCTCGTAGATTATTTAAATCCTCGCTGAATATAAATTCTCAGAGTTATGTGACATGGATGACTTGGGCATCAATGGAGGAAGAACAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAACCTCTATTTCCAACAGCGCACAGAAGTTGTAGATGATGCTACATGGGTTATGGGATTCTTAGATATTTTAGACCCGGCAATTGACAGTTTAAAGACGTTCCTCAAGCTGAGCCCAAGTTCCTACAACATGCCGTTTAATTCTTTGACAAATATTGCGGGAATAAATAAAAACAAAGTCGATTTTTCTAGCGACCATGATGATGATGATGATTATGGTGAAAGTGACTTCGATTTGGATGCTTTCATTATGAAAAAGTTATCCTTAGATACGTCCAATCTAGAAGTTCAGTTGGAAGCCCCCAAAATTTCTTCTGAGAAGAGAATTCCATCTGGTAGAAGGATATGGCGACCAAATAATAGAATTTCTAAAGTGCAAGTCCAAAGTAATGTTGTTTAA 1563 0.4203 MPMFEPERLESKERPLAVNLDLALYRAKLMARRSFRYEEAEALLQKCISFWPEDGRPYVVLGKILSKQSKTGEAREIYEKGCQATQGENAYIWQCWAVLEMQMGNIRRARELFDAATVADKKHVAAWHGWAVLELKQGNIKKARSLLGKGLQYCGQNEYIYQTLALLEARAKRYQQARYLFNQATKCNPNSCASWLSWAQMEVEQENYRAARKLFEKAVQASPKNRFAWHVWGVFEANVGNIEKGRKLLKIGHTLNPRDAVLLQSLALLEYQHSTANLARVLFRRASELNPRHQPVWFAWGWMEWKEGNMNTARDLYQKTLSIDQNSETAARCLQAWGVLEQRIGNLSAARRLFKSSLNINSQSYVTWMTWASMEEEQGNSVRAEEIRNLYFQQRTEVVDDATWVMGFLDILDPAIDSLKTFLKLSPSSYNMPFNSLTNIAGINKNKVDFSSDHDDDDDYGESDFDLDAFIMKKLSLDTSNLEVQLEAPKISSEKRIPSGRRIWRPNNRISKVQVQSNVV* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00335 520 SUPERFAMILY TPR-like 31 270 IPR011990 GO:0005515
Lapu3g00335 520 Pfam Tetratricopeptide repeat 164 225 - -
Lapu3g00335 520 Pfam Tetratricopeptide repeat 99 148 - -
Lapu3g00335 520 Gene3D Tetratricopeptide repeat domain 264 412 IPR011990 GO:0005515
Lapu3g00335 520 Gene3D Tetratricopeptide repeat domain 16 263 IPR011990 GO:0005515
Lapu3g00335 520 FunFam Uncharacterized protein 5 262 - -
Lapu3g00335 520 SUPERFAMILY TPR-like 243 434 IPR011990 GO:0005515
Lapu3g00335 520 ProSiteProfiles TPR repeat profile. 192 225 IPR019734 GO:0005515
Lapu3g00335 520 FunFam PsbB mRNA maturation factor Mbb1 263 411 - -
Lapu3g00335 520 SMART tpr_5 124 157 IPR019734 GO:0005515
Lapu3g00335 520 SMART tpr_5 90 123 IPR019734 GO:0005515
Lapu3g00335 520 SMART tpr_5 331 364 IPR019734 GO:0005515
Lapu3g00335 520 SMART tpr_5 260 293 IPR019734 GO:0005515
Lapu3g00335 520 SMART tpr_5 192 225 IPR019734 GO:0005515
Lapu3g00335 520 SMART tpr_5 158 191 IPR019734 GO:0005515
Lapu3g00335 520 SMART tpr_5 55 88 IPR019734 GO:0005515
Lapu3g00335 520 SMART tpr_5 294 327 IPR019734 GO:0005515
Lapu3g00335 520 SMART tpr_5 21 54 IPR019734 GO:0005515
Lapu3g00335 520 ProSiteProfiles TPR repeat profile. 158 191 IPR019734 GO:0005515
Lapu3g00335 520 SMART hat_new_1 240 272 IPR003107 GO:0006396
Lapu3g00335 520 SMART hat_new_1 172 204 IPR003107 GO:0006396
Lapu3g00335 520 SMART hat_new_1 138 170 IPR003107 GO:0006396
Lapu3g00335 520 SMART hat_new_1 104 136 IPR003107 GO:0006396
Lapu3g00335 520 SMART hat_new_1 206 238 IPR003107 GO:0006396
Lapu3g00335 520 SMART hat_new_1 274 306 IPR003107 GO:0006396
Lapu3g00335 520 SMART hat_new_1 345 377 IPR003107 GO:0006396
Lapu3g00335 520 SMART hat_new_1 308 343 IPR003107 GO:0006396
Lapu3g00335 520 SMART hat_new_1 69 102 IPR003107 GO:0006396
Lapu3g00335 520 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 1 508 IPR044624 GO:0003729|GO:0006397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00335 - - vun:114175850 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00335 3 3357792 3362787 Lapu3g00335 3 3357792 3362787 ECH