Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00328 ATGAGTACCATGAAATTTTGCAGCCGATGCAACAACGTTCTATACCCTACCGAGGATAAGGAGAACAAGGTTCTTCTCCGCGTTTGCCGCTACTGCGATCACCAGGAGATTGCAGATAACAACATTGTCTATAGAAATAAGATACATCATTCTGTTCAAAGGCGCACTCGAGAGCTGGAAAATGTAGCTGCAGATCCAACACTTCCTCGCACCAAGTCTGTTCGCTGCTCTCAATGCAACCATGGAGAAGCTGTCTTTTTCAAGGCAACGGTCAAAGGGGAAGAAAGCTCGGCACTCAATTTCGTTTGCTGCAACCCAACTTGTGGCAACCGTTGGAGAGAGTAG 345 0.4696 MSTMKFCSRCNNVLYPTEDKENKVLLRVCRYCDHQEIADNNIVYRNKIHHSVQRRTRELENVAADPTLPRTKSVRCSQCNHGEAVFFKATVKGEESSALNFVCCNPTCGNRWRE* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00328 114 CDD Zn-ribbon_RPB9 64 113 IPR034012 GO:0006379
Lapu3g00328 114 Pfam RNA polymerases M/15 Kd subunit 4 36 IPR001529 GO:0006351
Lapu3g00328 114 Gene3D - 1 46 - -
Lapu3g00328 114 PIRSF RNApol_RpoM 4 114 IPR012164 GO:0003899|GO:0006351
Lapu3g00328 114 Gene3D - 47 114 - -
Lapu3g00328 114 SMART rpol9cneu 5 58 IPR001529 GO:0006351
Lapu3g00328 114 ProSiteProfiles Zinc finger TFIIS-type profile. 72 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lapu3g00328 114 Pfam Transcription factor S-II (TFIIS) 75 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lapu3g00328 114 SUPERFAMILY Zinc beta-ribbon 1 48 - -
Lapu3g00328 114 PANTHER DNA-DIRECTED RNA POLYMERASE 1 114 IPR012164 GO:0003899|GO:0006351
Lapu3g00328 114 FunFam DNA-directed RNA polymerase II subunit RPB9 1 46 - -
Lapu3g00328 114 FunFam DNA-directed RNA polymerase subunit 47 114 - -
Lapu3g00328 114 SUPERFAMILY Zinc beta-ribbon 55 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00328 Lapu-Chr3 3283202 3286834 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00328 K03017 - gmx:100806190 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00328 3 3283202 3286834 Lapu3g00328 3 3283202 3286834 ECH
Lapu3g00328 3 3283202 3286834 Lapu9g00064 9 515194 517997 PCT