Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu3g00324 | ATGTTCCTCTTCGACTGGTTCTATGGCATTCTAGCTTCCCTCGGCCTCTGGCAGAAAGAAGCCAAGATTCTCTTCCTCGGTCTCGATAATGCCGGAAAGACTACCCTCCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCACCAGCCAACCCAACACCCCACTTCGGAGGAATTGAGCATTGGCAAGATCAAGTTTAAGGCTTTTGATTTGGGGGGTCATCAAGTTGCCCGTAGAGTCTGGAAAGACTATTATGCCAAGGTGGATGCAGTAGTTTACCTGGTTGATGCCTATGACAAAGAGAGGTTCGCAGAGTCGAAGAAGGAGCTTGATGCCCTGCTTTCGGATGAATCATTGGCAAATGTTCCATTTCTTGTGCTAGGGAATAAGATTGACATTCCATATGCTGCATCAGAAGAAGAGCTACGATATCATCTGGGCCTGACCAATTTCACTACAGGGAAGGGGAAGGTCAATCTCACAGAGTCCAACCTTCGGCCTCTCGAAGTGTTCATGTGCAGCATTGTGCGCAAAATGGGATACGGGGATGGCTTCCAGTGGGTCTCTCAAAGAGAAGAAGATTATACAAAAGAAGGAATGTTTCTTTTTGATTGGTTCTATGGAATTCTGGCTAGCCTTGGTCTGTGGCAAAAGGAGGCCAAGATTTTATTCCTGGGATTAGATAATGCTGGCAAGACCACTTTGCTTCACATGCTCAAAGATGAGAGACTAGTTCAGCATCAACCTACTCAATATCCCACTTCGGAGGAGTTGAGTATTGGGAAGATAAAGTTTAAGGCATTTGATTTGGGTGGCCACCAGATTGCTCGTAGGGTCTGGAAAGATTATTACGCTCAGGTGGATGCGGTTGTATACCTGGTGGATGCATATGACAAGGAGAGATTTTCAGAATCAAAGAAGGAGCTGGATGCTCTTCTTTCTGACGAGTCACTTGCAAATGTGCCTTTCCTTATCTTGGGAAACAAGATTGACATACCTTATGCAGCCTCAGAGGACGAGCTACGTTATCACATGGGCCTCACTAACTTCACCACAGGCAAGGGCAAGGTTAATTTGTCTGACTCCAATGTTCGTCCTCTGGAGGTTTTCATGTGCAGTATTGTCCGCAAGATGGGGTATGGTGAAGGCTTTCAGTGGCTTTCTCAGTATATTAAATAG | 1179 | 0.458 | MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLTESNLRPLEVFMCSIVRKMGYGDGFQWVSQREEDYTKEGMFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFSESKKELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGKVNLSDSNVRPLEVFMCSIVRKMGYGEGFQWLSQYIK* | 393 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu3g00324 | 392 | FunFam | GTP-binding protein SAR1A | 1 | 193 | - | - | |
| Lapu3g00324 | 392 | FunFam | GTP-binding protein SAR1A | 200 | 392 | - | - | |
| Lapu3g00324 | 392 | Pfam | ADP-ribosylation factor family | 8 | 190 | IPR006689 | GO:0003924|GO:0005525 | |
| Lapu3g00324 | 392 | Pfam | ADP-ribosylation factor family | 207 | 391 | IPR006689 | GO:0003924|GO:0005525 | |
| Lapu3g00324 | 392 | CDD | Sar1 | 201 | 391 | - | - | |
| Lapu3g00324 | 392 | ProSiteProfiles | small GTPase Arf family profile. | 213 | 391 | - | - | |
| Lapu3g00324 | 392 | PANTHER | RE74312P | 200 | 392 | IPR006687 | GO:0005525|GO:0006886 | |
| Lapu3g00324 | 392 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 216 | 391 | IPR027417 | - | |
| Lapu3g00324 | 392 | SMART | sar_sub_1 | 4 | 192 | IPR006689 | GO:0003924|GO:0005525 | |
| Lapu3g00324 | 392 | SMART | sar_sub_1 | 203 | 391 | IPR006689 | GO:0003924|GO:0005525 | |
| Lapu3g00324 | 392 | CDD | Sar1 | 2 | 190 | - | - | |
| Lapu3g00324 | 392 | PRINTS | GTP-binding SAR1 protein signature | 321 | 342 | IPR006689 | GO:0003924|GO:0005525 | |
| Lapu3g00324 | 392 | PRINTS | GTP-binding SAR1 protein signature | 221 | 244 | IPR006689 | GO:0003924|GO:0005525 | |
| Lapu3g00324 | 392 | PRINTS | GTP-binding SAR1 protein signature | 365 | 389 | IPR006689 | GO:0003924|GO:0005525 | |
| Lapu3g00324 | 392 | PRINTS | GTP-binding SAR1 protein signature | 249 | 273 | IPR006689 | GO:0003924|GO:0005525 | |
| Lapu3g00324 | 392 | PRINTS | GTP-binding SAR1 protein signature | 276 | 301 | IPR006689 | GO:0003924|GO:0005525 | |
| Lapu3g00324 | 392 | Gene3D | - | 198 | 392 | IPR027417 | - | |
| Lapu3g00324 | 392 | Gene3D | - | 1 | 192 | IPR027417 | - | |
| Lapu3g00324 | 392 | SMART | arf_sub_2 | 4 | 196 | - | - | |
| Lapu3g00324 | 392 | SMART | arf_sub_2 | 203 | 392 | - | - | |
| Lapu3g00324 | 392 | ProSiteProfiles | small GTPase SAR1 family profile. | 213 | 391 | - | - | |
| Lapu3g00324 | 392 | ProSiteProfiles | small GTPase SAR1 family profile. | 14 | 192 | - | - | |
| Lapu3g00324 | 392 | ProSiteProfiles | small GTPase Arf family profile. | 14 | 213 | - | - | |
| Lapu3g00324 | 392 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 17 | 192 | IPR027417 | - | |
| Lapu3g00324 | 392 | NCBIfam | small GTP-binding protein domain | 19 | 137 | IPR005225 | GO:0005525 | |
| Lapu3g00324 | 392 | NCBIfam | small GTP-binding protein domain | 218 | 334 | IPR005225 | GO:0005525 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu3g00324 | Lapu-Chr3 | 3230985 | 3237615 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu3g00324 | K07953 | - | qsu:112007278 | 370.933 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lapu3g00324 | 3 | 3230985 | 3237615 | Lapu3g00324 | 3 | 3230985 | 3237615 | ECH | |
| Lapu3g00324 | 3 | 3230985 | 3237615 | Lapu6g00986 | 6 | 10011438 | 10014715 | ECH | |
| Lapu3g00324 | 3 | 3230985 | 3237615 | Lapu9g00068 | 9 | 591019 | 593878 | PCT |