Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00320 ATGACCATCGACTTAGATTCCATCGCTCGCAAAGTCGACGTTGATAATCGCATTCCCCTCCGCTATTATTATCGGATTGCCGATAACCTCCTCAAGCAGGCATGTATCTACAGGGAGGAGAATAATGTAGTTGACTTGTACATCATTCTCCTTAGATTTTTAAGTTTGGTTTCTGAAACTATACCGTATCATCGAGATTATCATGCTTCGCTTCCCAATGAAAGAGCAGCTTATAAGAAGAGATCCCTAGCTGTATTGGATGAGCTCGAATCTTTGAAGCCTGAATATAAACGCAGGGTGGAAAAATTGAAAGACTTGCATATAAAAGCTCCATTGCCCGAGGAGAATGGCTTCAATAAGGCTTTGCAGAGTTCAGTAAATTCATCTTTGGAATGGCCGGTTGTCAATAAAAGTAATAACTTGAGCATGGATTTTAAACAGCCTGCTGGATTCGGTTCACACTCTTCATGGAATTATAATAACATGTTATCATCAGATTCCAGGCCCATTGACAAGCAGTTTCAGAAACTATCTCTTAGTCTACCTGCTCCAAATAAGGAGACGTTGTCCAGACACTCATTTTTAGGACCAAATGGCCTTCGGGGCCAATGGCTTGGGCCTAGTGCAGAAATAAAGGTTCAATATCCCAGCAGTGATCTCACACATGCCAAGGATTCAAGCCTGAATCACGGTGGGCTATATGACATTGTGGCAATTAAAGATGGTGATCAAGAACCAGTTACATCCACAATGGACTCAGTTCTCTCCTTGGATGATGGAAGATGGTTGCGTCCTTCTGTTGAGTCTGGTTCTTCTGTTGTAACTGAATCAAGGGAGGACGCCTTGCAATTGCTCAACATCAAGCAACCTTTGCCGCCTCCTGTTCTTGCGCAGGTGCACCCGGAATGTGTCCATATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCAGCTAAATCTTCTCATGATTCTGGACCTGGTCCAACAACATATCAGCACCTACATATTTTCTTATACTGGGTAAAAGTTATAATAATTTCACTTCTTGTTGCAGCCTGTCAAAATGATGGAAGATTTTTTGAGATTAGCTTCACAAAACACGCGGAAGAACTTAGAGACTTGTGGTGTTCTTGCAGGATCCTTGGTAAGAGTGTCTCTATTCCTTTGTTATTCCATTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTAGGTTGGATACATACACATCCATCCCAAACTTGTTTCATGTCTTCTGTGGATCTGCACACTCATTACTCGTACCAGATCATGTTACCAGAGGCAGTTGCTATTGTCATGGCCCCTACAGATACCTCTAGTCCACATGGCATATTTCATCTGTCTGATCCAGGTGGTGTTTCTGTAATTCGGAACTGTCAACAACGTGGATTTCATCCCCATGAGGAGCCTTCGGATGGAAGTCCAATATATGAACACTGCTCTCATGTCTATATGAATGCTAACTTGAAGTTTGATGTTGTTGACCTTCGAGAGAGATGA 1551 0.4217 MTIDLDSIARKVDVDNRIPLRYYYRIADNLLKQACIYREENNVVDLYIILLRFLSLVSETIPYHRDYHASLPNERAAYKKRSLAVLDELESLKPEYKRRVEKLKDLHIKAPLPEENGFNKALQSSVNSSLEWPVVNKSNNLSMDFKQPAGFGSHSSWNYNNMLSSDSRPIDKQFQKLSLSLPAPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSDLTHAKDSSLNHGGLYDIVAIKDGDQEPVTSTMDSVLSLDDGRWLRPSVESGSSVVTESREDALQLLNIKQPLPPPVLAQVHPECVHIPPSKVADPRPGPAKSSHDSGPGPTTYQHLHIFLYWVKVIIISLLVAACQNDGRFFEISFTKHAEELRDLWCSCRILGKSVSIPLLFHCQTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAVAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANLKFDVVDLRER* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00320 516 Gene3D Cytidine Deaminase, domain 2 353 516 - -
Lapu3g00320 516 SUPERFAMILY JAB1/MPN domain 382 470 - -
Lapu3g00320 516 MobiDBLite consensus disorder prediction 307 327 - -
Lapu3g00320 516 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 412 443 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lapu3g00320 516 FunFam AMSH-like ubiquitin thioesterase 3 1 116 - -
Lapu3g00320 516 SUPERFAMILY USP8 N-terminal domain-like 4 104 - -
Lapu3g00320 516 CDD MPN_AMSH_like 394 514 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Lapu3g00320 516 PANTHER AMSH-LIKE PROTEASE 394 514 - -
Lapu3g00320 516 Coils Coil 86 106 - -
Lapu3g00320 516 ProSiteProfiles MPN domain profile. 344 470 IPR037518 -
Lapu3g00320 516 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Lapu3g00320 516 Gene3D - 2 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00320 Lapu-Chr3 3181539 3189683 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00320 K11866 - gmx:100812784 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00320 3 3181539 3189683 Lapu3g00320 3 3181539 3189683 ECH