Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00246 ATGTCGATGAGTGAGCGGAAGACTATTGACCTCGAACAGGGATGGGATTTCATGCAGAAGGGCATCACCAAACTCAAGAACATTCTGGAAGGCCTGCCCGAGCCTCAATTCAGCTCCGAGGACTACATGATGCTTTATACGACCATCTACAATATGTGTACTCAGAAGCCTCCTCATGACTATTCCCAACAACTCTATGACAAGTACAGGGAGTCTTTTGAAGAATACATTGTATCGACGGTATTGCCTTCTTTGAGAGAGAAGCATGATGAATTTATGTTGAGAGAACTTGTGATGAGATGGGCAAACCATAAAATTATGGTTCGGTGGCTTTCTCGGTTCTTTCACTATTTGGATCGCTACTTTATTGCTCGGAGATCACTTCCACCTCTTAATGAAGTTGGATTGACTTGCTTCCGTGATTTGGTGTACAAGGAAGTAAATGGGAAAGTTAGAGATGCAGTTATTTCACTTATTGATCAAGAACGTGAGGGAGAACAGATTGATAGAGCTCTATTAAAGAATGTATTAGACATATTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAAAATGATTTTGAAACTGCCATGCTCAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCAAACTGGATCCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGCGGAGGAATGCTTAAAACGGGAGAAAGATAGGGTTGCGCATTACTTGCACTCTAGTAGTGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGTTGTTATCTGTGTATGCAAACCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCTTTACTTAGAGATGACAAGGTTGAAGACTTGTCAAGAATGTTCAGGCTATTCTCTAAAATACCTCGAGGCTTAGATCCTGTTTCCAGTATATTTAAGCTGCATGTTACCACTGAAGGTATGGCATTGGTGAAGCAGGCTGAAGATGCAGCTAGCAACAAAAAGGCAGAAAAAAAGGATATTGTTGGTCTACAGGAGCAGGTTTTTGTTCGGAAAGTGATTGAGTTGCATGACAAGTACCTGGCATATGTGAATGATTGTTTCCAGAATCACACTCTTTTTCACAAGGCCCTTAAAGAGGCTTTTGAGGTCTTTTGCAACAAAGGTGTTGCTGGAAGTTCAAGTGCAGAACTGCTTGCCTCCTTCTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTAAGTGATGAAGCAATTGAAGAAACTCTAGAAAAGGTGGTGAAGCTGCTTGCCTATATCAGTGACAAAGACTTGTTTGCTGAATTCTATAGGAAGAAGCTTGCTCGAAGGCTTCTCTTTGACAAGAGTGCCAATGATGATCATGAGAGAAGTATTTTGACAAAATTGAAGCAACAATGTGGCGGACAGTTTACCTCAAAGATGGAAGGAATGGTTACGGATTTGACATTGGCAAAGGAGAATCAAACAAGTTTTGAGGAGTATTTGAGCAATAATTCCAATGCAGACCCTGGTATAGACTTGACAGTTACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCTGCAGAAATGATTAGGTGCGTTGAGGTTTTCAAAGAATTTTATCAAACTAAAACAAAGCACAGAAAACTTACATGGATATATTCCTTGGGTACCTGTAATATAAGTGGGAAATTTGAGCCCAAAACCGTGGAGCTGATTGTTACAACTTACCAGGCTTCAGCATTGCTGCTTTTTAATTTGTCAGATAGGTTGAGTTACTCAGAGATAATGACTCAATTAAACTTATCAGACGATGATGTTATTAGACTGCTGCATTCCTTGTCATGTGCCAAGTACAAGATTCTCATCAAGGAGCCAAATACAAAAACAATATCATCCACTGATTATTTTGAATTTAATTCTAAATTTACTGACAAAATGAGGAGAATCAAGATTCCTCTTCCTCCTGTGGATGAGAAGAAGAAAGTAATTGAGGATGTTGACAAGGACAGAAGATATGCTATCGATGCCTCAATCGTGCGAATTATGAAGAGTCGGAAAGTTTTGGGCTACCAACAATTAGTAATGGAGTGTGTTGAACAGTTGGGTCGCATGTTTAAGCCTGACGTCAAGGCTATTAAAAAGCGGATTGAAGATTTGATTTCTCGAGACTACTTGGAAAGAGACAAAGATAATGCTAACATGTTCAAGTACTTGGCTTGA 2235 0.3951 MSMSERKTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYIVSTVLPSLREKHDEFMLRELVMRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKEVNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFETAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKLHVTTEGMALVKQAEDAASNKKAEKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLASFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNSNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMIRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTVELIVTTYQASALLLFNLSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILIKEPNTKTISSTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANMFKYLA* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00246 744 Coils Coil 322 342 - -
Lapu3g00246 744 PANTHER CULLIN 9 740 IPR045093 -
Lapu3g00246 744 Gene3D Cullin Repeats 390 504 - -
Lapu3g00246 744 Gene3D Cullin Repeats 267 389 - -
Lapu3g00246 744 FunFam Cullin-1, putative 142 263 - -
Lapu3g00246 744 FunFam Cullin-1 like 507 660 - -
Lapu3g00246 744 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Lapu3g00246 744 SMART cul_2 420 569 IPR016158 -
Lapu3g00246 744 Pfam Cullin family 24 647 IPR001373 GO:0006511|GO:0031625
Lapu3g00246 744 SUPERFAMILY "Winged helix" DNA-binding domain 659 744 IPR036390 -
Lapu3g00246 744 Gene3D - 661 744 IPR036388 -
Lapu3g00246 744 Gene3D Cullin; Chain C, Domain 2 507 660 - -
Lapu3g00246 744 FunFam Cullin-1 like 390 503 - -
Lapu3g00246 744 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Lapu3g00246 744 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Lapu3g00246 744 Gene3D Cullin Repeats 3 141 - -
Lapu3g00246 744 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
Lapu3g00246 744 FunFam Cullin-1 661 744 - -
Lapu3g00246 744 FunFam Cullin-1, putative 267 389 - -
Lapu3g00246 744 FunFam Cullin-1, putative 5 141 - -
Lapu3g00246 744 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
Lapu3g00246 744 Gene3D Cullin Repeats 142 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00246 Lapu-Chr3 2590966 2599199 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00246 K03347 - gmx:100793682 1459.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00246 3 2590966 2599199 Lapu9g00139 9 1235534 1246174 PCT
Lapu6g01457 6 14348240 14360907 Lapu3g00246 3 2590966 2599199 PCT