Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01608 ATGAAGAGGAACAGAAGTTTTTCCTTACTCTTTTTCCTCTCCTTGTTGGTGATTGTCTTTATCACCTTCTCTACAGTTTCTGTGGAAGCAAGGAAGACTAACACCAAGAAAAATCTTCACAAACGTCACAATCATAAAGATAGTCACAGTAGCAATGGCCACGGTCGAGGGTCACATTCTCCATGTCCAGCACCAACCGCTCCTTATTATGGTCCTCAAGGGAGCATGTTTGACGTTGTGTCTTTTGGTGCCAAGGGTAATGGAGTTTCTGATGATTCAGAGGCACTTGTAGCTGCATGGAAAGGTGCATGTAAAGTTGCCGGTGCTACAGTTAAAATTCCAGCACAACTCAAGTTCCTCATCAAACCTGTTACTTTACAAGGCCCTTGTATGCCTGACCTTACTCTTCAGATAGATGGAACTCTATTGGCACCACCTGAAGCATCTTCTTGGCCAACATCCAGTTTGTTTCAGTGGATAAATTTCAAGTGGGTGCAGAACTTCACCATCAAAGGTTCTGGCACTGTTGATGGCCAAGGCTATAATTGGTGGTGCTCCTCAGAATTTTATGACATACAGGCTATAAGATTTTACTCCAGCAACTCTGTCACAGTTCGTGATATCAGAATGATAAACAGTCCTCTGTGTCATCTAAAATTTGACAACTCAAAGGGGATTGAAGTTGACAACATTACAATATCTTCCCCAGAGAATAGCCCAAACACTGATGGCATTCACTTACAAAACACCCAGGACGTGGAAATTCAACGTTCTATCATTGCAACAGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAATATTCATGTCCACCACATTAATTGTGGCCCTGGACATGGTATAAGTTTGGGAGGATTAGGGAAAGACAAGAGTGCAGCATGTGTGTCTGACATCATTGTTGAGGATATTTCTATGAAAAACACTCTATATGGAGCAAGGATCAAAACATGGCAGGGAGGCTTTGGTATGGTTAAAAATGTGTCATTTTCCAGAATTCAAGTCTACAATGTTATGTTTCCAATAATGATAGACCAATACTACTGTGACAAGCAAAACTGCAAGAACCACACAAGCACTGTGGTGATTTCTGGGGTGAAGTTTGATCAGATAAGTGGAACTTTTGGGATGCAGCCTGTCCATCTAGCTTGCAGCAATTCCATACCATGCACAGATGTTGATTTAACTGACATTCAACTGAGTCCCTCCCATAAATATAAAGGTCTGCAACAAGCTGTGTGCTGGAACTCTTATGGAAAATCACAAGGTCCCTTGCTTCCTTCAAGCATTGATGATTGCTTGAAAAGTGGTGGTGGACTAATCAAGAGGATAGCAAGGTCACATGACAGAGTGTGTTACTAA 1383 0.4201 MKRNRSFSLLFFLSLLVIVFITFSTVSVEARKTNTKKNLHKRHNHKDSHSSNGHGRGSHSPCPAPTAPYYGPQGSMFDVVSFGAKGNGVSDDSEALVAAWKGACKVAGATVKIPAQLKFLIKPVTLQGPCMPDLTLQIDGTLLAPPEASSWPTSSLFQWINFKWVQNFTIKGSGTVDGQGYNWWCSSEFYDIQAIRFYSSNSVTVRDIRMINSPLCHLKFDNSKGIEVDNITISSPENSPNTDGIHLQNTQDVEIQRSIIATGDDCVSIQTGCSNIHVHHINCGPGHGISLGGLGKDKSAACVSDIIVEDISMKNTLYGARIKTWQGGFGMVKNVSFSRIQVYNVMFPIMIDQYYCDKQNCKNHTSTVVISGVKFDQISGTFGMQPVHLACSNSIPCTDVDLTDIQLSPSHKYKGLQQAVCWNSYGKSQGPLLPSSIDDCLKSGGGLIKRIARSHDRVCY* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01608 460 SMART pbh1 250 271 IPR006626 -
Lapu2g01608 460 SMART pbh1 332 353 IPR006626 -
Lapu2g01608 460 SMART pbh1 273 293 IPR006626 -
Lapu2g01608 460 SMART pbh1 303 324 IPR006626 -
Lapu2g01608 460 SMART pbh1 223 249 IPR006626 -
Lapu2g01608 460 PANTHER - 76 427 - -
Lapu2g01608 460 FunFam polygalacturonase At1g48100 65 443 - -
Lapu2g01608 460 SUPERFAMILY Pectin lyase-like 71 436 IPR011050 -
Lapu2g01608 460 MobiDBLite consensus disorder prediction 35 49 - -
Lapu2g01608 460 MobiDBLite consensus disorder prediction 34 65 - -
Lapu2g01608 460 Gene3D - 67 440 IPR012334 -
Lapu2g01608 460 Pfam Glycosyl hydrolases family 28 109 414 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01608 Lapu-Chr2 29666349 29668985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01608 1 459 Glycoside Hydrolase AT3G26610 59.708 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01608 K01213 - gmx:100803027 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01608 2 29666349 29668985 Lapu2g01608 2 29666349 29668985 ECH