Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01593 ATGTTTGGAGGCAACAATGGAAATCGCTTGCTTCCTGTTTTCTTGGACGAGACTCAATTTCGGCATCAAACTAATGCATCAAATCAGTTGCAGTTGTTTGGAAATTTACAAGCTGGATGTAGTGTTGATCCAGTTAATTACTTTGGAAATGAGCATGTGAGCTCCATGGTTCAGCCTAATAAACGCAGCAAGGAAATGGAAGATATATCAAAGCAAAGACTTCAGATTTCCTTAAATTACAATGTCAATCAAAAGGATGCTGATCGATTAGCAAGTATTCAAAATGCCAACCCTGTGTCAACAGGATTGAGGCTTTCATATGATGATGATGAGCATAACTCATCTGTTACTTCCGCGAGCGGCAGCATGACTGCCACACCGTCTATCATATTGTCTCTTGGTGACAATATCAGAACTGAGCTTGATAGGCAGCAAGAAGAGTTGGATCAATATATTAAACTTCAGAAGGAACAATTGTCAAAGGGAGTGAGAGACATGAAGCAAAAACACATGGCTGCTCTCCTCTCCTCCATTGAGGAAGGTATTAGCGCAAAGCTAAAGGAAAAAGATGTGGAGATAGAAAACATGAACCGGAAAAACAGGGAGCTGGCAGAAAGAATAAAGCAGGTGGCTATTGAAGCACAAAGCTGGCATTACAGAGCAAAGTATAATGAGTCAGTTGTCAATGCATTAAGGAACAACCTACAGCAGGCAATTTCACAAGGTGCTGAACAAGGGAAGGAAGGGTTTGGAGATAGTGAAGTTGATGATGATGCCTCGTATATAGATCCTAACAACTTCCTAAACGTTCCCCCTATAAACTCTGCTCTCAAGAGCTACCAAGATGCGGAGAATCTGACTTGCAGAGCTTGCAAGGCAAAGGCGGTTTCCATGTTGTTGATGCCTTGTAGGCACCTGTGCTTGTGTAAGGATTGTGAGGGATTTATCAATGTTTGTCCCGTTTGCCAATTGATAAAAACTGCAAGTGTTGAGGTGTATCTATCTTAA 1008 0.4157 MFGGNNGNRLLPVFLDETQFRHQTNASNQLQLFGNLQAGCSVDPVNYFGNEHVSSMVQPNKRSKEMEDISKQRLQISLNYNVNQKDADRLASIQNANPVSTGLRLSYDDDEHNSSVTSASGSMTATPSIILSLGDNIRTELDRQQEELDQYIKLQKEQLSKGVRDMKQKHMAALLSSIEEGISAKLKEKDVEIENMNRKNRELAERIKQVAIEAQSWHYRAKYNESVVNALRNNLQQAISQGAEQGKEGFGDSEVDDDASYIDPNNFLNVPPINSALKSYQDAENLTCRACKAKAVSMLLMPCRHLCLCKDCEGFINVCPVCQLIKTASVEVYLS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01593 335 CDD mRING-HC-C3HC5_CGRF1-like 287 322 - -
Lapu2g01593 335 Gene3D - 89 157 - -
Lapu2g01593 335 PIRSF SBP1_RNase_bind 1 335 IPR017066 -
Lapu2g01593 335 Coils Coil 134 161 - -
Lapu2g01593 335 Coils Coil 186 213 - -
Lapu2g01593 335 ProSiteProfiles Zinc finger RING-type profile. 288 323 IPR001841 -
Lapu2g01593 335 Pfam Zinc finger, C3HC4 type (RING finger) 285 323 - -
Lapu2g01593 335 Gene3D Death Domain, Fas 158 296 IPR011029 -
Lapu2g01593 335 FunFam Baculoviral IAP repeat containing 7 297 333 - -
Lapu2g01593 335 Gene3D - 75 331 - -
Lapu2g01593 335 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 49 332 IPR017066 -
Lapu2g01593 335 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 270 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01593 Lapu-Chr2 29466371 29471426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01593 282 323 Miscellaneous Gene Families AT4G39050 40.476 8.64e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01593 K19042 - gmx:100791550 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01593 2 29466371 29471426 Lapu2g01593 2 29466371 29471426 ECH