Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01578 ATGGCAGATTCCGCCTCTTCCCCCGCAACCCTACCTACCAATCCCCAACCCTCTGAATCCGCACCTCCCAACCCACCCGATCCACTTCCCCAATCCTCAACACCACCTTCGTCTACACCCCTCGCTGCAAACCCTAACCCCAATCCAACGCTGCTCCCTCCGCCTCCCGCGCTACTCTTTCCGGCCGGTACTCCTCCACAGGTTCCCGGCGTACTCCCTCCCTCATTCCGCCCGCTGGCTCCTCAGGTGCCACAATTCTCTCCCGTCCCCGCTCCCCACCCGGTCTACCAAAACCCTGCCGTTCCGCCGCCAGGTGTGGCTAGTGCCCCCGCCCCGCCGCAGATGCAGCCGATTATGTCGTACCAGGTTCAACCCGGTAACCCGACCATGCGACCCTTTGCTCCGATCCCTAATGGTTACGCACCAGCTCCGACCGTAACTCCCGCGGGAATTCCTCGATACCCTCCTCCTTATGGAACTATGGTTCGTCCTGTCTTTCCTCCACGTCCTCCTGGAGCAGTTAACATACCTCCAATATCGCGCCCACCTGTAGCAGGGATACCTACTGTACGCCCAATTATTCCTCCTGTTGTCAGACCTATGGTAGCCCCTACTGTTACCCCAGCTGAGAAGCCTCAAAACACAGTTTACATTGGCAAGATTGCATCAACTGTGGAAAATGAGTTCATGCTCTCTCTCCTTCAATTATGTGGAACTATCAAGACCTGGAAACGTCCTCAGGATTTATCAACTGGAACTCCTACCAGTTTTGGGTTTTATGAGTTTGAGTCTGCAGAGGGGGTTCTCCGTGCCTTGCGACTCCTTACTAAACTGAATATTGACGGGCAAGAACTGAAGGTCAACGTGAATCAAGCTATGAAAGAACATCTGGAGCGGTATGTTCAGAAAAAAGCTGAAAACTTGAACAAAGAAAGTCAGACAGGAGTAGTTGAAAAAGATGAAGGTGAACAAACTTCTAATGCAAATGAGGGTACAAAGGCTGAGAAAGAACCTTCAAATAAAGTGGATAGTGAATCAGTAAATAAGGAATCCCATGATGTGACAAACTTTGGGATTGTCACTGATGAAGATAGAGAAGTGGATCGTGAGGCTTTAGAAAAGATCACAAAGATGATAGAGGAAAGGTTGAAGACAAAACCTTTGCCTCCACCTCCTGCACAGCCAAGTGGTGATGGTTCTGTGAATTTAACCTCAGAACAACCTGTTAAAACAAGAGAGGGAGACTCTGTTGATACAGAGAAGAATGAATCTGGTGAAAATAAAAGTGAGAAAGAGACAAACAATGATAAAACGAGCAGTGAACATGATAGGCCTGAAAGCCCTGATAGAAGGCATGATAGAAGAAGCAGAGAGAGGGACCGAGATAGGGAACTAAAACGAGAAAAGGATAGAGAACTTGAAAGATATGAGAGAGAAGCAGAGCGGGAACGTGTTCGGAAAGAGAGGGAACAAAGACGGAGAATTGAGGAGGCTGAACGTCAATATGAAGCCTACTTGAAGGAATGGGAGTATAGAGAACGAGAGAAAGAGAAAGAGCGCCAGTATGAAAAAGAGAAGGAGAAGGAAAGGGAACGTAAAAGGAGAAAGGAGATACTTTATGATGAAGAGGATGAGGATGAGGATTCTAGGAAGAGGTGGCGTAGAAGTGCAATAGAGGAGAAGAGAAAGAAGAGGTTGCGTGAGAAGGAAGATGACCTGGTTGACAAACAAAAGGAAGAGGAAGAAATTGCTGAGGCTAAGAGGAAGGCCGAGGAGGAACAAAAGAGGCAAAGAGACGCTGTAAAACTATTAACTGAGCATGTGGTAAATGGTGGTAATGAAAATATGATTACTGAAGAGGTTACTAATGAAATAAAAAGCAATGTAACTGAACAAGATACTGCAGCGGATTATATTCGTGAAGATCATACTGGTGATGGGAATGCATCTAATGTCACCAATGATGAATTAAACATAGTTGCTCCAACTGATACACAAGGGAATGCTCCTACAAAAAAATTGGGATTTGGCCTAGTCGGTTCAGGGAAAAGAACAACTGTGCCTTCTTTTTTCCACGAAGAGGAGGATGATGATGCTCACAAGGACAAAAAAATGAGGCCATTGGTTCCAATTGATTACTCAACTGAAGAATTGCAGGCTGTTCAACCTACAGTTCCTGGGCCAACACCACCTAATTTGGCTGCTGCTGCAGAATTTGCGAAGCGTATATCCAGTACAAATTTCAAGGAAGATAAGCTGGATGGAGAACGGGATAGAAGTAGGCGTTCAAGTGACAGGTCTAACCACCGGGACAGGGACAGAAATGATGAAGATGGTACTCACAACAGAGATGAAAACAAAGAGAGAATTTCTGACCGTGACAGGGATCGAGATCATGGATCAGAGAAACTTAAGACTTCTGATAACAAGAGGCTTTTGGATGCTAAACAATTGATTGATATGATACCAAAAACCAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGTATATGATAAGCATCAACTACATGAAAGAATGAGACCGTGGATTTCAAAGAAAATCAAGGAGTTTTTGGGGGAAGAAGAGACTACATTGATAGATTACATTGTTTCCAGTACGCAAGAACATGTGAAAGCATCCCAAATGCTTGAGCGTCTTCAGATTATTTTGGATGAAGAGGCTGAAATGTTCGTTCTGAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACAGGTTTAGCTCTGAGGTCAAAATCATGA 2775 0.4544 MADSASSPATLPTNPQPSESAPPNPPDPLPQSSTPPSSTPLAANPNPNPTLLPPPPALLFPAGTPPQVPGVLPPSFRPLAPQVPQFSPVPAPHPVYQNPAVPPPGVASAPAPPQMQPIMSYQVQPGNPTMRPFAPIPNGYAPAPTVTPAGIPRYPPPYGTMVRPVFPPRPPGAVNIPPISRPPVAGIPTVRPIIPPVVRPMVAPTVTPAEKPQNTVYIGKIASTVENEFMLSLLQLCGTIKTWKRPQDLSTGTPTSFGFYEFESAEGVLRALRLLTKLNIDGQELKVNVNQAMKEHLERYVQKKAENLNKESQTGVVEKDEGEQTSNANEGTKAEKEPSNKVDSESVNKESHDVTNFGIVTDEDREVDREALEKITKMIEERLKTKPLPPPPAQPSGDGSVNLTSEQPVKTREGDSVDTEKNESGENKSEKETNNDKTSSEHDRPESPDRRHDRRSRERDRDRELKREKDRELERYEREAERERVRKEREQRRRIEEAERQYEAYLKEWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSAIEEKRKKRLREKEDDLVDKQKEEEEIAEAKRKAEEEQKRQRDAVKLLTEHVVNGGNENMITEEVTNEIKSNVTEQDTAADYIREDHTGDGNASNVTNDELNIVAPTDTQGNAPTKKLGFGLVGSGKRTTVPSFFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTVPGPTPPNLAAAAEFAKRISSTNFKEDKLDGERDRSRRSSDRSNHRDRDRNDEDGTHNRDENKERISDRDRDRDHGSEKLKTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHERMRPWISKKIKEFLGEEETTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01578 924 SMART pwi_2 840 913 IPR002483 GO:0006397
Lapu2g01578 924 MobiDBLite consensus disorder prediction 334 362 - -
Lapu2g01578 924 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 924 - -
Lapu2g01578 924 SMART rrm1_1 215 288 IPR000504 GO:0003723
Lapu2g01578 924 Pfam PWI domain 847 910 IPR002483 GO:0006397
Lapu2g01578 924 MobiDBLite consensus disorder prediction 90 111 - -
Lapu2g01578 924 MobiDBLite consensus disorder prediction 304 362 - -
Lapu2g01578 924 MobiDBLite consensus disorder prediction 15 76 - -
Lapu2g01578 924 MobiDBLite consensus disorder prediction 688 710 - -
Lapu2g01578 924 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Lapu2g01578 924 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Lapu2g01578 924 SUPERFAMILY PWI domain 845 912 IPR036483 GO:0006397
Lapu2g01578 924 MobiDBLite consensus disorder prediction 746 808 - -
Lapu2g01578 924 CDD RRM_RBM25 214 297 IPR034268 -
Lapu2g01578 924 Coils Coil 459 508 - -
Lapu2g01578 924 Gene3D PWI domain 803 919 - -
Lapu2g01578 924 Coils Coil 563 607 - -
Lapu2g01578 924 Coils Coil 511 539 - -
Lapu2g01578 924 MobiDBLite consensus disorder prediction 1 76 - -
Lapu2g01578 924 MobiDBLite consensus disorder prediction 380 497 - -
Lapu2g01578 924 MobiDBLite consensus disorder prediction 661 733 - -
Lapu2g01578 924 MobiDBLite consensus disorder prediction 90 113 - -
Lapu2g01578 924 ProSiteProfiles PWI domain profile. 827 924 IPR002483 GO:0006397
Lapu2g01578 924 FunFam RNA Binding Motif protein homolog 803 919 - -
Lapu2g01578 924 Gene3D - 206 323 IPR012677 -
Lapu2g01578 924 MobiDBLite consensus disorder prediction 411 497 - -
Lapu2g01578 924 SUPERFAMILY RNA-binding domain, RBD 165 288 IPR035979 GO:0003676
Lapu2g01578 924 MobiDBLite consensus disorder prediction 513 598 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01578 K12822 - gmx:100809428 1229.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01578 2 29305365 29313541 Lapu2g01578 2 29305365 29313541 ECH