Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01575 ATGGCTGCGGAGAACAACAACAACGTTCAGTTTTCAGACTTACCCGTCAAGAGACCCAGAGAAGAAGAACAAGACGGAGAAAATGGCGTCTCCGACACCCTTTCAACGCTCCCCAATCACTCTCAACACCCTGGTATATCTGCTGTTATTCCCGGTTGGTTTTCTGAAATCAGCCCAATGTGGCCTGGGGAGGCGCATTCTTTGAAGGTGGAAAAGATTCTGTTTGAAGGGAAGTCTGACTATCAGAATGTCATGGTCTTCCAGTCGTCAACTTATGGCAAGGTTCTTGTTCTGGATGGGGTCATTCAGCTTACAGAGAGGGATGAGTGTGCCTACCAAGAGATGATCACACATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGGGATGGTGGAGTCTTGCGTGAAGTAGCACGCCATTCCTCAGTAGAGAAGATAGACATTTGTGAGATAGACAAGATGGTTGTTGATGTCTCCAAACAATTTTTTCCAGATGTATCTGTAGGTTTTGAGGATCCACGCGTGACACTTAATATTGGCGATGGAGTTGCATTCTTGAAGGCTGTTGAAGAAGGAACTTATGACGCAGTTATAGTGGATTCATCCGACCCTATTGGTCCTGCTCAAGAACTGTTTGAGAAGCCTTTTTTCGCCTCGGTTGCAAGGGCTCTTCGTCCAGGAGGAGTCGTATGTACACAAGCAGAAAGTATATGGCTTCATATGAATATCATTGAGGGCATTGTGGCTAATTGTCGCCAGATATTCAAAGGTTCTGTCAACTATGCATGGACCACGGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGTTCAACTGAGGGTCCTACTGTGGACTTCAAGAATCCAGTGAGTTCTATAGAAGAGGATGATAGTCAACAGTCAACAAGACCATTGAAATTTTACAACTCTGAGATTCATTCTGCGGCTTTCTGTTTGCCATCTTTTGCCAAAAGGGCTATTGGTTCTAAAGCAAATTGA 1026 0.4454 MAAENNNNVQFSDLPVKRPREEEQDGENGVSDTLSTLPNHSQHPGISAVIPGWFSEISPMWPGEAHSLKVEKILFEGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKQFFPDVSVGFEDPRVTLNIGDGVAFLKAVEEGTYDAVIVDSSDPIGPAQELFEKPFFASVARALRPGGVVCTQAESIWLHMNIIEGIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPTVDFKNPVSSIEEDDSQQSTRPLKFYNSEIHSAAFCLPSFAKRAIGSKAN* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01575 341 NCBIfam spermidine synthase 53 331 IPR001045 GO:0003824
Lapu2g01575 341 Gene3D Spermidine synthase, tetramerisation domain 33 105 IPR037163 -
Lapu2g01575 341 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 51 288 IPR030374 -
Lapu2g01575 341 CDD AdoMet_MTases 129 240 - -
Lapu2g01575 341 PANTHER SPERMIDINE/SPERMINE SYNTHASE 44 338 IPR001045 GO:0003824
Lapu2g01575 341 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 336 IPR029063 -
Lapu2g01575 341 MobiDBLite consensus disorder prediction 1 41 - -
Lapu2g01575 341 Pfam Spermidine synthase tetramerisation domain 52 106 IPR035246 -
Lapu2g01575 341 PIRSF Spermidine_synth 41 341 IPR030668 GO:0006595
Lapu2g01575 341 FunFam Spermidine synthase 1 44 103 - -
Lapu2g01575 341 Pfam Spermine/spermidine synthase domain 109 297 - -
Lapu2g01575 341 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 130 143 IPR030373 -
Lapu2g01575 341 FunFam Spermidine synthase 1 104 341 - -
Lapu2g01575 341 Hamap Polyamine aminopropyltransferase [speE]. 52 337 IPR001045 GO:0003824
Lapu2g01575 341 Gene3D Vaccinia Virus protein VP39 106 341 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01575 Lapu-Chr2 29276549 29279369 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01575 K00797 - gmx:100790506 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01575 2 29276549 29279369 Lapu2g01575 2 29276549 29279369 ECH