Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01538 ATGTCCGATCCTTCGAGGGGTCGCGTTACCATCACTCTAGGGCGTAGCGGTCAGGTTGTGAAGAGGGACGTATCTTCTGTAGATGTTTCTTCTTTCTCTTCTTTTCCCTCAGCTGGCACTAAGCGGTCTGTAAGAGACAGGATTGGAAATAATGCAGATAGTTCTGCGTGGCATGGAAATGGACTTGGCGGCAATAAACGACAACGAGGAGATGTAAGCATACAAAATGGACTGGATGGCAATGATCTTCGGTTGAAGCTCATGCAAAAAAGTGCATCTAGGCATGCTGACAGCAATGGTAGTAAGAGGCATATGGATCTCCGTGAAAAACTTTCAAAGGCAACACACCCTCTTCCAAATAGTTTTAATTCAAAGCAGCGGATGCCAGAATCAAGAGAAACAAGTTTGTTGAGGCAAATTCCCTCAGCTAGAAGTTCTGATGATTTAATGCGCATGGAATCCATGAGAAGCTCGTACTCTCCTTGGACATTGGATCATATTAGAAGAAGATCACCAGATGGGTTTCCTAGTACTTCCAGGGGTATTTCCCCGCAAAGGGATGTCCAAAACCTACAGAGAAGGCCATTAAACAGGACATATGATGGTGTCAGACCAGTTCCATATGTAAGTAGGGATGTCCTTGAAACTTCGAGGCCTCCTGTAAGTACACCTCAATCTTTTATGTCACGCTCCACAATGTCCACATTGCCTCCAGTAACTGCCAAGCCTGTAGCATCTCATCCTGGCCAACTTCCTCCATCAAGCAGTGTTGCTCAAAGGTCTTCGTATGTGGGTGATGAACAAGTACAGCAATCAAACCAGACTGTGGATGGCCTTTTACATGCACTAGGACTTCAAAAATATGCCATTCTCTTTAAGGCTGAGGAAGTGGATATGACTGCATTGAAGCAGATGGGAGAAAATGACCTCAAGGAGCTCGGGATTCCTATGGGCCCAAGGAAAAAAATTCTTCTCGCTCTCTTGCCCCGTTCCAAGCGTCAACAATGA 1008 0.4554 MSDPSRGRVTITLGRSGQVVKRDVSSVDVSSFSSFPSAGTKRSVRDRIGNNADSSAWHGNGLGGNKRQRGDVSIQNGLDGNDLRLKLMQKSASRHADSNGSKRHMDLREKLSKATHPLPNSFNSKQRMPESRETSLLRQIPSARSSDDLMRMESMRSSYSPWTLDHIRRRSPDGFPSTSRGISPQRDVQNLQRRPLNRTYDGVRPVPYVSRDVLETSRPPVSTPQSFMSRSTMSTLPPVTAKPVASHPGQLPPSSSVAQRSSYVGDEQVQQSNQTVDGLLHALGLQKYAILFKAEEVDMTALKQMGENDLKELGIPMGPRKKILLALLPRSKRQQ* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01538 335 MobiDBLite consensus disorder prediction 214 265 - -
Lapu2g01538 335 SMART SAM_4 268 333 IPR001660 GO:0005515
Lapu2g01538 335 MobiDBLite consensus disorder prediction 165 188 - -
Lapu2g01538 335 MobiDBLite consensus disorder prediction 216 239 - -
Lapu2g01538 335 FunFam DDHD domain-containing 2 274 335 - -
Lapu2g01538 335 MobiDBLite consensus disorder prediction 249 265 - -
Lapu2g01538 335 Gene3D - 273 335 IPR013761 -
Lapu2g01538 335 MobiDBLite consensus disorder prediction 25 40 - -
Lapu2g01538 335 MobiDBLite consensus disorder prediction 116 142 - -
Lapu2g01538 335 MobiDBLite consensus disorder prediction 111 152 - -
Lapu2g01538 335 PANTHER SCP160 85 331 - -
Lapu2g01538 335 MobiDBLite consensus disorder prediction 25 77 - -
Lapu2g01538 335 Pfam SAM domain (Sterile alpha motif) 271 327 IPR001660 GO:0005515
Lapu2g01538 335 ProSiteProfiles SAM domain profile. 271 334 IPR001660 GO:0005515
Lapu2g01538 335 SUPERFAMILY SAM/Pointed domain 272 327 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01538 Lapu-Chr2 28749196 28757769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01538 232 327 Glycosyltransferase AT3G07170 44.118 6.12e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01538 - - gmx:100797199 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01538 2 28749196 28757769 Lapu2g01538 2 28749196 28757769 ECH