Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01537 ATGGGACTTCTTCAACATCCCTTGTGTTGCCACTCACAACAACAACAACAAAAATCCTATGATCACTTCCATTCGGAATCATCAACCTCGTCCTCTCTTCATTCACAACCAAGTCTTCCTTCAGTCCCTTCACTGAGTTCCGTCACCCCACAACAACAACCCCACCACCCCCAGCAACAACCTCAAACCACCGTCAAAATCCACTCCGCCCCAATCTCCTCCCTCGCCCTCAACGGCAAACTCCTCTACAGCGCCGCCTCCAGCGGGGAGGTCAAAACATGCAGCAGAGACCCTTTCACCCTCCAAACCAACACCACTACCAACACCAACGTTGCTGTCGCGGCAACCACCAACGCGCCCATTAAGTGCCTCATCGTATTCCACGACACGCTCTTCACCGCACATCAAGACCACAAAATCAGAGTCTGGAAAACCGACCAACCCACCAAGTGCATCGCCACGCTTCCCACGCTCCATGACCGTTTCTCCAAGCTATTCTCCTCCAAGAACTACGTTGAGGTGCGCCGCCACAAGAAACGCACGTGGGTGCATCACGTGGACGCCGTGTCCACCCTCGCGCTCTCCCACGACGGCTCCCTCCTCTACTCCGCTTCCTGGGACAGGACGTTCAAAATCTGGCGAACCTCGGACTTCAAATGTTTGGAGTCCGTACAAAACGCGCACGAGGACGCGATTAACTCCTTGGTTTTGTCGAATGACGGCGCTGTCTATACGGGCTCCGCCGACACAAAGATAAAGATGTGGAAGAAGCGTGAGGGTGAGAAAAAGCATTCGCTTGTGGGAACGTTAGAGAAGCATAAATCCGCAGTTAACGCTCTTGCGCTTAGCGCAGATGGGTCGGTGCTGTACTCTGGCGCGTGTGACAGATCAATTTTAGTGTGGGAAAGTGATGAGAACGATGATAATAATATGGTGGTGGTGGGGGCTTTAAGGGGGCACACGAAGGCGATACTGTGTTTGGTGGTGATGGCGGATTTGGTGTGTAGTGGATCTGCTGATAACAGTGTTAGGCTATGGAGGAAAGAGATTGAGAAGGGTTATTCGTGTTTGGCGGTGTTGGAAGGTCATCGACGACCCGTGAAGTGTTTGGCCATGGCTGTTGACTCCAACAGTGGTGGTCCTGATGAGGATGATAATAGGTCTTATCTGGTTTACAGTGCAGGTTTAGACTGTGACATTAAAGTGTGGCAAATACGCGTTCCTTTGTTGCCATTGTGA 1239 0.519 MGLLQHPLCCHSQQQQQKSYDHFHSESSTSSSLHSQPSLPSVPSLSSVTPQQQPHHPQQQPQTTVKIHSAPISSLALNGKLLYSAASSGEVKTCSRDPFTLQTNTTTNTNVAVAATTNAPIKCLIVFHDTLFTAHQDHKIRVWKTDQPTKCIATLPTLHDRFSKLFSSKNYVEVRRHKKRTWVHHVDAVSTLALSHDGSLLYSASWDRTFKIWRTSDFKCLESVQNAHEDAINSLVLSNDGAVYTGSADTKIKMWKKREGEKKHSLVGTLEKHKSAVNALALSADGSVLYSGACDRSILVWESDENDDNNMVVVGALRGHTKAILCLVVMADLVCSGSADNSVRLWRKEIEKGYSCLAVLEGHRRPVKCLAMAVDSNSGGPDEDDNRSYLVYSAGLDCDIKVWQIRVPLLPL* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01537 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 311 IPR001680 GO:0005515
Lapu2g01537 412 Pfam WD domain, G-beta repeat 315 346 IPR001680 GO:0005515
Lapu2g01537 412 Pfam WD domain, G-beta repeat 355 403 IPR001680 GO:0005515
Lapu2g01537 412 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Lapu2g01537 412 Pfam WD domain, G-beta repeat 266 301 IPR001680 GO:0005515
Lapu2g01537 412 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 19 406 IPR045182 -
Lapu2g01537 412 Gene3D - 170 408 IPR015943 GO:0005515
Lapu2g01537 412 FunFam BnaA09g28200D protein 172 260 - -
Lapu2g01537 412 Gene3D - 8 169 IPR015943 GO:0005515
Lapu2g01537 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 265 IPR001680 GO:0005515
Lapu2g01537 412 SMART WD40_4 175 214 IPR001680 GO:0005515
Lapu2g01537 412 SMART WD40_4 353 404 IPR001680 GO:0005515
Lapu2g01537 412 SMART WD40_4 217 256 IPR001680 GO:0005515
Lapu2g01537 412 SMART WD40_4 310 347 IPR001680 GO:0005515
Lapu2g01537 412 SMART WD40_4 58 95 IPR001680 GO:0005515
Lapu2g01537 412 SMART WD40_4 263 302 IPR001680 GO:0005515
Lapu2g01537 412 SMART WD40_4 107 144 IPR001680 GO:0005515
Lapu2g01537 412 Pfam Nucleoporin Nup120/160 100 214 - -
Lapu2g01537 412 SUPERFAMILY WD40 repeat-like 57 405 IPR036322 GO:0005515
Lapu2g01537 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 213 - -
Lapu2g01537 412 MobiDBLite consensus disorder prediction 15 66 - -
Lapu2g01537 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 223 IPR001680 GO:0005515
Lapu2g01537 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 302 - -
Lapu2g01537 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 346 - -
Lapu2g01537 412 CDD WD40 64 404 - -
Lapu2g01537 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 346 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01537 Lapu-Chr2 28702446 28703684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01537 227 405 Miscellaneous Gene Families AT5G08390 25.946 2.63e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01537 - - vun:114174011 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01537 2 28702446 28703684 Lapu2g01537 2 28702446 28703684 ECH