Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01523 ATGGCCACCAACACTCAACTCATCCTCTCACTCCCACCACGTTGCCCTTTTTCTCTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTACTTCACATTTCTTCCAACAAATACCACTCTCTCTTTCTCTCCCCTTCGCCTTCGATCTCTTCCTCTTTCCCTCAATTTCCGTGCCTCCTTCTCCTTCAAGTCCCCTACCTCAACCATTCGCGCATTCTCCGACGCCGAGGAGGACGAAGAAGAAGAAGAAGAGGACGACGACGAAGAAGATGATGAAGAAGACGAGGATGAAGACGACGACGTTGCTGCCGACGAATACGACCAGGTATCCAGTGATGCTCCCGAGGACGATGCCGGTGTGTTTGCTCGCCACGACGAATTCAAGTGGCAGAGAGTCGAGAAGCTCTGCAACGAAGTCAGGGAGTTCGGCGCTGATATCATCGACGTCGACGAGCTCGCCTCCGTCTACAATTTTCGCATCGACAAGTTTCAGCGGCAGGCGATACTGGCGTTTCTGAGAGGCTCGTCGGTGGTGGTCTCCGCTCCGACGAGCAGCGGGAAGACGCTGATTGCGGAAGCCGCGGCGGTGGCCACGGTGGCTAGGGGACGGCGAATATTCTACACGACGCCGCTCAAGGCGTTGTCCAATCAGAAGTTTCGCGAATTCCGTGAGACTTTTGGTGATAGTAATGTTGGCCTTCTTACGGGTGATTCTGCCGTGAACAAGGATGCTCAGGTTTTGATCATGACCACGGAGATATTGCGCAACATGTTGTATCAGAGTGTTGGTAATGTTTCTTCTAGAAGTGGACTTGTAAATGTTGATGTGATTGTTTTGGATGAAGTTCATTACCTTAGTGACATATCTCGTGGTACAGTCTGGGAGGAGATTGTTATTTATTGCCCAAAAGTAGTTCAACTAATTTGCTTGTCTGCAACTGTTGCAAATCCAGATGAGTTGGCTGGCTGGATTGGTCAGATTCATGGTGAAACTGAATTGGTAACATCATCAAAACGCCCAGTTCCGTTGACTTGGCATTTCTCTACGAAGAATTCCTTATTACCACTTCTTGACGAGAAAGGAACACACATGAACAGGAAGCTGTCATTCAATTATTTACAACTTCAAGCTGCAGGGGCTAAACCTTACAAGGATGATTGGTCTAGAAAAAGGAATTCCCGGAAACGGGGAACACGCTATAGTTATGATAGTGATGATAGCACGTTTGAACAACGTTCTCTTTCAAAGAATGACATAAATGCCATTCGTCGATCACAAGTTCCTCAAGTAATTGATACATTATGGCAACTTCAGTCCAGGGATATGCTGCCAGCTATTTGGTTTATTTTTAGCAGGAAGGGTTGTGATGCAGCTGTGCAATATCTAGAAAATTGCAAACTTTTAGATGAGTGTGAATCAAGTGAGGTTGAACTAGCCTTGAAGAAGTTCCGCAAGCAGTATCCTGATGCTCTCAGAGAATCAGCTGTAAGAGGACTTTTGCAAGGGGTTGCCGCACATCATGCTGGATGTCTACCTCTATGGAAGGCATTCATAGAAGAGCTGTTTCAAAGAGGACTTGTTAAGGTTGTTTTTGCCACAGAAACCCTGGCTGCTGGAATCAATATGCCTGCCAGAACAGCTGTTATTTCGTCCCTTAGCAAAAGGGGTGATAGTGGGCGTATACCATTAAGCTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATTGATGAGAGTGGTCATGTAGTCCTCATCCAAACTCCTAATGAAGGTGCTGAGGAGGGCTGCAAAGTACTGTTTGCTGGACTAGAGCCTTTAGTGTCACAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGCTGGTGTGAAAGCCATTCAGTGGTCAAATGAATCCGGTAACATGAAACCTTCCACGGGGAGAACTTTGGAAGAAGCTAGGAAATTAGTTGAGCAGAGTTTTGGCAATTATGTTAGTAGCAATGTAATGCTGGCTGCTAAAGAGGAACTTAATAAAATTGAGAAAGAAATCGAGTTGCTGATGTCAGAAACTACTGATGAAGCTGTAGACAGAAAAACCAGGAAGGCCTTAGCACCAAAGCAATACAAGGAAATTGCAGAATTACTGGAAGATTTAAGATCAGAAAAGCGTGTTCGAACTAAATTGCGCAAACAGGTTGAAGCAAAGAGAATGTCTGCCCTGAAACCTTTGTTGGAGGAGCCCGAAAGTGGTCATTTACCATTTTTATGCTTGCAGTATAGAGATTCTGAAGGAGTTGAACATTCAATTCCTGCTGTATTTTTGGGGAAGGTTGACTCCCTTAATGCTTCAAAACTCAAAACTATGATTTCTTCTGTTGATTCTTTTGCATTGAATTTAGCAGAAGCAGAGCCAAGTGTTGCAGATTCTGCACTGAGTAAAGATCTTAAAATTTCATATCATGTGGCTCTGGGTTCAGATAACACTTGGTACCTATTTACAGAAAAGTGGATTAAGACGGTATATGGGACAGGCTTTCCTAATGTTCCACTGTCTCAGGGGGATGCTCGACCTCGAGAAATTATGAGCACTCTCCTTGATAAGGGTGATATGACTTGGGATAAGCTTTCTCACTCTGAGCATGGTGGTTTATGGTTCATGGAAGGATCTCTTGATACATGGTCTTGGAGCTTGAATGTTCCTGTTTTGAGTAGCTTGTCGGAAAACGATGAGTTACTACTACAGTCTCAAGATTACAAAGATGCCATTGAATGTTACAAGGAACAAAGAAATAAAGTTGCACGATTGAAGAAGAAGATATCTCGTAGTGAAGGCTATAAAGAATATTTTAAAATTATAGACGCAGTCAAGTTTGTTGAGGAGAAAATCAAGCGCCTGAAGAATAGATCTAAACGTTTGATTAATAGGATCGAACAGATTGAACCCTCAGGTTGGAAGGAGTTTATGCAAGTTAGTAATGTCATTCATGAAATCAGAGCTTTAGATATTAATACACATGTCATATTTCCACTTGGAGAAACCGCTGGTGCAATTCGAGGAGAAAATGAGCTATGGCTGGCGATGGTTCTTCGCAATAAAATTTTAGTAGATCTAAAACCTGCACAACTCGCTGCAGTGTGCGCAAGTTTGGTGTCCCTGGGTATCAAAGTCCGACCCTGGAAAAATAACAGTTACATTTATGAGCCTTCTGCAACTGTAACCAAATTCATAACGTTATTAGATGAACAAAGAAATGCCTTATTGGCATTGCAGGATAAACATGGGGTGACAATCTCTTGCTGTTTGGATAGCCAATTTTGTGGCATGGTTGAGGCCTGGGCTTCTGGGCTGACATGGAGAGAAATAATGATGGATTGTGCAATGGACGATGGCGATTTAGCTCGTCTCCTGCGCCGGACCATTGATCTGTTAGTTCAGATTCCAAAGTTGCCAGATATTGATCCACTGTTGCAGCGCAATGCAAAGGCTGCTTCTGCTGTCATGGATCGGCCTCCAATAAGTGAACTTGTGGGGTAA 3531 0.439 MATNTQLILSLPPRCPFSLFFSSSSSSSSYFTFLPTNTTLSFSPLRLRSLPLSLNFRASFSFKSPTSTIRAFSDAEEDEEEEEEDDDEEDDEEDEDEDDDVAADEYDQVSSDAPEDDAGVFARHDEFKWQRVEKLCNEVREFGADIIDVDELASVYNFRIDKFQRQAILAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKVVQLICLSATVANPDELAGWIGQIHGETELVTSSKRPVPLTWHFSTKNSLLPLLDEKGTHMNRKLSFNYLQLQAAGAKPYKDDWSRKRNSRKRGTRYSYDSDDSTFEQRSLSKNDINAIRRSQVPQVIDTLWQLQSRDMLPAIWFIFSRKGCDAAVQYLENCKLLDECESSEVELALKKFRKQYPDALRESAVRGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSGRIPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEEGCKVLFAGLEPLVSQFTASYGMVLNLLAGVKAIQWSNESGNMKPSTGRTLEEARKLVEQSFGNYVSSNVMLAAKEELNKIEKEIELLMSETTDEAVDRKTRKALAPKQYKEIAELLEDLRSEKRVRTKLRKQVEAKRMSALKPLLEEPESGHLPFLCLQYRDSEGVEHSIPAVFLGKVDSLNASKLKTMISSVDSFALNLAEAEPSVADSALSKDLKISYHVALGSDNTWYLFTEKWIKTVYGTGFPNVPLSQGDARPREIMSTLLDKGDMTWDKLSHSEHGGLWFMEGSLDTWSWSLNVPVLSSLSENDELLLQSQDYKDAIECYKEQRNKVARLKKKISRSEGYKEYFKIIDAVKFVEEKIKRLKNRSKRLINRIEQIEPSGWKEFMQVSNVIHEIRALDINTHVIFPLGETAGAIRGENELWLAMVLRNKILVDLKPAQLAAVCASLVSLGIKVRPWKNNSYIYEPSATVTKFITLLDEQRNALLALQDKHGVTISCCLDSQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLVQIPKLPDIDPLLQRNAKAASAVMDRPPISELVG* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01523 1176 SMART DSHCT_2 1001 1175 IPR012961 -
Lapu2g01523 1176 Coils Coil 668 688 - -
Lapu2g01523 1176 Gene3D - 120 339 IPR027417 -
Lapu2g01523 1176 Gene3D - 954 1168 - -
Lapu2g01523 1176 Coils Coil 954 974 - -
Lapu2g01523 1176 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 85 1171 - -
Lapu2g01523 1176 SMART ultradead3 156 346 IPR014001 -
Lapu2g01523 1176 Coils Coil 907 937 - -
Lapu2g01523 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 593 IPR027417 -
Lapu2g01523 1176 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 332 IPR014001 -
Lapu2g01523 1176 Gene3D - 340 608 IPR027417 -
Lapu2g01523 1176 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 958 1168 - -
Lapu2g01523 1176 Coils Coil 75 95 - -
Lapu2g01523 1176 CDD SF2_C_Ski2 423 591 - -
Lapu2g01523 1176 MobiDBLite consensus disorder prediction 385 404 - -
Lapu2g01523 1176 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 426 625 IPR001650 -
Lapu2g01523 1176 MobiDBLite consensus disorder prediction 68 117 - -
Lapu2g01523 1176 Pfam DSHCT (NUC185) domain 1005 1171 IPR012961 -
Lapu2g01523 1176 MobiDBLite consensus disorder prediction 74 112 - -
Lapu2g01523 1176 SMART helicmild6 493 579 IPR001650 -
Lapu2g01523 1176 Coils Coil 710 730 - -
Lapu2g01523 1176 FunFam ATP-dependent RNA helicase 122 339 - -
Lapu2g01523 1176 Pfam DEAD/DEAH box helicase 163 315 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01523 Lapu-Chr2 28540446 28549617 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01523 K26077 - gmx:100780908 1983.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01523 2 28540446 28549617 Lapu2g01523 2 28540446 28549617 ECH