Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01478 ATGTCTACCGTTGCATTAGAACCTCTCTTCCATCTTTGCTCAAGAAAACCTTCATTTCATAGGCAAAAACAAATCCTATTGAGACCCTTCTTTTTTCCCACGTGCTCCTCCAACCTCAATGATGCATCCTTCATCTTCCACCAACCTCGCAGGACTCTCTCTCCCGTCCATGCAGTTTCACTTACAGACACACCTGCCCTCCATTCCCTCCAATGCCCTCAGACGATCACCAACACTTTTGCTATCGACCGAACCCAAATGGCGGAGGGAAAGATATTTGTGAGGTTAGATCGTGGAAAGAACATGAGGGATTGGGAGCTTACGGTGGGCTGCAGTCTACCCGGAAAATGGATTCTTCACTGGGGAGTTACCCTTGTTGATGATGTTGGAAGGGAATGGGATCAACCTCCTCTTGATATGATACCCCCTGGATCTGTTCCTATAAAGGACTATGCAGTAGAGACCCCTTTGAAGAAGTCATCCCTGTCTGCAGAAGGAGATACGCTTCATGAAGTCAGGATTGATATAAAAGCCAAAATTGGAATTTCAGCAATTCATTTTGTTCTCAAGGATGAGGAAACTGGAGCTTGGTACAAAAACAAAACAAGAGATTTCGTGGTTTCTTTGGTGGATTACATTAAGGCGGATTCGGATACAAGTATAATTGAACCTAAAAGAGGCTTTGTTTTTTGGCCAGGGAATTTGGGGCAAATATCTAAAATGTTCTCCAAGTCAAAAGCTGACGAAAATGAAAGCAGTGAATCCAGAGTTCCAGAACGGGAAGACAATCAACCAGGTTTCTATGAGGAAGTGTACGTAACAAAGAAGGTTTTAACTAGTAACTCTATCAGTGTCTCCACCAAGAAAAGCTTGGAGTCTGGGGCAGTTAAGGACATTTTATATTTTGAAACTGATCTACCTGGAGATGTTGTCCTTCACTGGGGAGTTTGTAGGGATGATTCAAGAAGGTGGGAAGTTCCATCTCCTCCTCATCCATCAGGCACAGTATCATTTAAAGATAGGGCTTTGAGAACTCTATTACGGCCAAGAGATGATGGAAAAGGATCTTCAGCACAAATCACTTTAGAAGAAGAATTTTCAGGATTTGTTTTTGTTCTTAAGCAAAATGAAAATACGTGGTTCAAGTACTTGGGAAATGACTTTTATGTTCCCCTCTCAAGTTCTAGCAACTTGCTTAATATTGGCAACAAGGAGGATCTGTCAGAACGTCTACAGATTGAAAAGTCTGGTCAAGAGAATTCTTTCTTTGCATTTACTGATACAATAGCCTATGAAATAAGAAATTTGGTCGCAGATAATTCCTCTGAGAAGAATCAAAAGATAAAATCTAAGAAGGCACAACAAAGCATTTTTGAAGAGATAGAAAGGCTGGCTGCTGAAGCCTATAATATATTCAGAAGCTCCATTCCAAGTTTCTCTAAGCCAACTACTGCAAAACCGGAAGAAACTAATGTGGAATTTGAGACAACTATTGTGGAACCTCAGTCAGCGGAATCAGAGACACTGTCCCTGGATCCAAAAATATGCTCTGGGACAGGCACAGGGTATGAAATATTATGCCAAGGGTTTAACTGGGAATCTCATATATGTGGAAGATGGTACATGGAGCTTAAAGAAATAGCTTCAGAACTAGCATCAGTTGGTTTCACTGTTGTCTGGTTACCACCACCTACAGAGTCGGTTTCACCTGAAGGATACATGCCAAGGGATTTATATAATCTAAATTCCAGATATGGAAACACGGATGAACTCAAAGGTTTGGTGAAAAGATTTCATGAAGTTGGGATGAAAGTTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCACACTATCAGAATGAGAATGGTGTTTGGAACATATTTGGAGGCTATCTTGACTGGGATGATAGTGCAGTTGTTTCAGATGATCCACATTTTCAGGGTAGGGGCAACACGAGTAGTGGAGATAGTTTTCACGCTGCTCCAAACATTGATCATTCACAGGAGTTTGTGAGAAAAGATCTCAAACAATGGTTATGCTGGTTGAGGAAAGAAATTGGATATGATGGATGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAGGACTACGTAGAAGCAAGTGTACCTTATTTTTCTGTGGGAGAGTACTGGGATTCCCTCAGTTATACATATGGTGAAACTGATCATAATCAAGATGCTCATAGGCAAAGGATAGTTGACTGGATCAGTGCCACTAATGGTACCTCTGGTGCATTTGATGTTACAACAAAAGGCATTCTTCACGCTGCACTGGAAAAATGTGAATATTGGCGATTGTCAGATGAGAAAGGAAAGCCTCCTGGTGTTATGGGATGGTGGCCTTCTCGTGCAGTTACCTTTATAGAGAATCATGACACTGGTTCTACTCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGATAGGATATGCTTACATTCTTACTCACCCAGGAACCCCATCAGTGTTTTATGACCATATTTTCTCTCCCTACAAAACTGAAATAGCAAGTCTGATATCTCTCAGAAAGAGGAACGGGATCCACTGCAGGAGTACAGTTGAAATTAGCAAAGCAGAAAGGGATGTGTATGCCGCCATCATTGATGAAAAAATTGCTATGAAGATCGGACCAGGACATTTTGAACCCCCAAGTGGCTCCCTCAAATGGTCCTTAGCTATTGAGGGAAAAGATTATGAGATTTGGGAAGCATCATAA 2748 0.4156 MSTVALEPLFHLCSRKPSFHRQKQILLRPFFFPTCSSNLNDASFIFHQPRRTLSPVHAVSLTDTPALHSLQCPQTITNTFAIDRTQMAEGKIFVRLDRGKNMRDWELTVGCSLPGKWILHWGVTLVDDVGREWDQPPLDMIPPGSVPIKDYAVETPLKKSSLSAEGDTLHEVRIDIKAKIGISAIHFVLKDEETGAWYKNKTRDFVVSLVDYIKADSDTSIIEPKRGFVFWPGNLGQISKMFSKSKADENESSESRVPEREDNQPGFYEEVYVTKKVLTSNSISVSTKKSLESGAVKDILYFETDLPGDVVLHWGVCRDDSRRWEVPSPPHPSGTVSFKDRALRTLLRPRDDGKGSSAQITLEEEFSGFVFVLKQNENTWFKYLGNDFYVPLSSSSNLLNIGNKEDLSERLQIEKSGQENSFFAFTDTIAYEIRNLVADNSSEKNQKIKSKKAQQSIFEEIERLAAEAYNIFRSSIPSFSKPTTAKPEETNVEFETTIVEPQSAESETLSLDPKICSGTGTGYEILCQGFNWESHICGRWYMELKEIASELASVGFTVVWLPPPTESVSPEGYMPRDLYNLNSRYGNTDELKGLVKRFHEVGMKVLGDAVLNHRCAHYQNENGVWNIFGGYLDWDDSAVVSDDPHFQGRGNTSSGDSFHAAPNIDHSQEFVRKDLKQWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYVEASVPYFSVGEYWDSLSYTYGETDHNQDAHRQRIVDWISATNGTSGAFDVTTKGILHAALEKCEYWRLSDEKGKPPGVMGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMIGYAYILTHPGTPSVFYDHIFSPYKTEIASLISLRKRNGIHCRSTVEISKAERDVYAAIIDEKIAMKIGPGHFEPPSGSLKWSLAIEGKDYEIWEAS* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01478 915 SMART aamy 524 853 IPR006047 GO:0005975
Lapu2g01478 915 SUPERFAMILY (Trans)glycosidases 523 839 IPR017853 -
Lapu2g01478 915 MobiDBLite consensus disorder prediction 243 263 - -
Lapu2g01478 915 MobiDBLite consensus disorder prediction 244 263 - -
Lapu2g01478 915 Gene3D - 858 914 IPR013780 -
Lapu2g01478 915 Pfam Alpha-amylase C-terminal beta-sheet domain 855 913 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lapu2g01478 915 CDD AmyAc_arch_bac_plant_AmyA 525 864 - -
Lapu2g01478 915 Pfam Alpha amylase, catalytic domain 551 811 IPR006047 GO:0005975
Lapu2g01478 915 Gene3D Glycosidases 524 857 - -
Lapu2g01478 915 PANTHER ALPHA-AMYLASE 514 914 - -
Lapu2g01478 915 SMART alpha-amyl_c2 854 914 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lapu2g01478 915 SUPERFAMILY Glycosyl hydrolase domain 858 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01478 Lapu-Chr2 27858590 27865791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01478 1 915 Glycoside Hydrolase AT1G69830 59.227 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01478 K01176 - gmx:100810333 1502.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01478 2 27858590 27865791 Lapu2g01478 2 27858590 27865791 ECH