Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01003 ATGGAAGTTCGCCGGCGACACCACCGCTCCCCTCCCGCCGGCGAACGCCTCAAACAACCCGACCCTAATCCAAACCACGACCCCCACTCCCACCTCACCAACGCCCTCTTCTTCACCGTCTTCTTCTCCGTCGCCTACTTCCTCCTCCACCGATGGCGTGAGAAGATCCGCACCTCCACCCCCCTACACCTTGTCACACTCTCTGAGGTAGCAGCCATCCTCTCCCTCATCGCCTCTTTCGTTTACCTAATGGCCTTCTTCGGCATTACCTTCATCCTCCACCCATTCCTTAACTTTCGCTCTTCCCCCGACGAAGACCTTGACCTCCACATTCGCAAACCCCCCAACCTACCTCTTTCCCCACCGCCTCCGCTCCCTCACGATGACCGTGACCTCGTCCTCGCTGTCGTCTCCGGCTCCGTCCCCTCCTACTCCCTCGAGTCCCGCCTCGGAGACTGCCAGCGCGCTGCTGAGATCCGCCGTCTGGCGGTGGAGAGCCTCACCGGTAGGTCCCTCCAGGGCCTTCCTGTGGAAGGCTTCGATTACGACTCCATTCTGGGACAGTGCTGTGAGATGCCGGTCGGGTTTGTTCAGATCCCGGTCGGCGTGGCTGGACCGCTTCTTCTCGACGGAAAAGAGTACACCGTTCCGATGGCCACCACCGAGGGGTGTCTGGTGGCCAGCACCAACAGAGGCTGCAAGGCCATTCACCTCTCCGGCGGAGCTTCCTCCATGCTCCTCCGCGATGCCATGACCAGAGCTCCCGTGGTTCGGTTCGGCTCCGCCAAACGTGCTTCTCAGCTCAAGTTCTTTCTTGAAGATCCTCTCAATTTCGATTCCCTTGCCGTCGTTTTCAACAAGTCAAGCAGGTTTGCAAGATTGCAGGACATAAAAGCAGCAATAGCAGGGAAGAATCTGTATATTAGATTCAGTTGTACCACAGGGGATGCCATGGGGATGAACATGGTCTCAAAAGGAGTTCAAAACGTGCTTAATTTTCTTCAGAACGATTTTCCTGACATGGATGTTCTTGGGATATCTGGGAATTTCTGTTCGGATAAGAAAGCTGCGGCGGTGAACTGGATTGAGGGGCGAGGAAAGTCGGTGGTGTGCGAGGCTGTGATTAAGGAAGAGGTGGTTAAGAAAGTACTGAAGACTAGCGTGGAGGCTCTGGTGGAACTTAATATGCTGAAGAACCTTACTGGGTCGGCTATGGCCGGTGCTCTTGGTGGTTTCAATGCCCATGCTAGTAACATCGTTTCTGCAGTTTACTTGGCCACTGGACAGGATCCTGCTCAGAATGTAGAGAGTTCTCACTGCATAACTATGATGGAAGCTGTGAACCAAGCCAAGGACCTTCACATCTCTGTTACCATGCCTTCCATTGAGGTGGGCACAGTTGGAGGGGGCACACAACTGGCATCTCAATCAGCTTGTCTCAATTTACTGGGCGTTAAGGGTGCGAGCAAAGACACCCCTGGTGCAAATTCTAGGTTACTAGCAACCGTAGTAGCTGGTTCAGTCCTGGCTGGGGAACTCTCACTCATGTCTGCAATTTCAGCTGGCCAACTTGTTAATAGCCACATGAAATACAACAGATCTAGCAAGGATATCTCCCAAGTTGTTTCCTAA 1632 0.5398 MEVRRRHHRSPPAGERLKQPDPNPNHDPHSHLTNALFFTVFFSVAYFLLHRWREKIRTSTPLHLVTLSEVAAILSLIASFVYLMAFFGITFILHPFLNFRSSPDEDLDLHIRKPPNLPLSPPPPLPHDDRDLVLAVVSGSVPSYSLESRLGDCQRAAEIRRLAVESLTGRSLQGLPVEGFDYDSILGQCCEMPVGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIHLSGGASSMLLRDAMTRAPVVRFGSAKRASQLKFFLEDPLNFDSLAVVFNKSSRFARLQDIKAAIAGKNLYIRFSCTTGDAMGMNMVSKGVQNVLNFLQNDFPDMDVLGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAVYLATGQDPAQNVESSHCITMMEAVNQAKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDTPGANSRLLATVVAGSVLAGELSLMSAISAGQLVNSHMKYNRSSKDISQVVS* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01003 543 Pfam Hydroxymethylglutaryl-coenzyme A reductase 157 533 IPR002202 GO:0004420|GO:0015936
Lapu2g01003 543 CDD HMG-CoA_reductase_classI 131 533 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lapu2g01003 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 464 471 IPR023076 GO:0004420
Lapu2g01003 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 309 323 IPR023076 GO:0004420
Lapu2g01003 543 Gene3D - 200 519 IPR023074 GO:0004420
Lapu2g01003 543 Gene3D - 250 366 IPR009023 -
Lapu2g01003 543 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 251 366 IPR009023 -
Lapu2g01003 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 307 325 IPR002202 GO:0004420|GO:0015936
Lapu2g01003 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 452 473 IPR002202 GO:0004420|GO:0015936
Lapu2g01003 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 189 210 IPR002202 GO:0004420|GO:0015936
Lapu2g01003 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 216 236 IPR002202 GO:0004420|GO:0015936
Lapu2g01003 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 398 424 IPR002202 GO:0004420|GO:0015936
Lapu2g01003 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 347 372 IPR002202 GO:0004420|GO:0015936
Lapu2g01003 543 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 250 366 - -
Lapu2g01003 543 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 352 528 - -
Lapu2g01003 543 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 28 537 IPR002202 GO:0004420|GO:0015936
Lapu2g01003 543 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 130 533 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lapu2g01003 543 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 125 199 - -
Lapu2g01003 543 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 124 522 IPR009029 GO:0015936|GO:0016616
Lapu2g01003 543 Gene3D - 126 199 IPR023282 GO:0004420
Lapu2g01003 543 MobiDBLite consensus disorder prediction 1 28 - -
Lapu2g01003 543 MobiDBLite consensus disorder prediction 1 25 - -
Lapu2g01003 543 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 129 533 IPR002202 GO:0004420|GO:0015936
Lapu2g01003 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 518 531 IPR023076 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01003 Lapu-Chr2 9398052 9402132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01003 31 539 Lipid Metabolism Gene Families AT1G76490 72.590 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01003 K00021 - gmx:100786956 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01003 2 9398052 9402132 Lapu2g01003 2 9398052 9402132 ECH