Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00988 ATGGTACTCATCACTGCACCTGTGCCGAAAGTACCACCCCACCACCTATTCTTGGACCAAAACCTTGATCTGAAGAACAACAACTCACGTACTTTGCCTTCTCCCAGCCATCAACTCGAGCTTCTACCACCGCTGCGCTACCCCATTCACACCTTCCCACGTCCCCTTATTCCTCAAACAACTTTCACCAAAAATGAGATGAAGAAAAAGAAGAGAAAAGAGACTACAACCTCAGACATATTGCACTTGATGGACGCTCTTCCTTTTCCCATATCCATTGACATCTACACTTCTTTGATAAAAGAGTGCACGGATTCCGGCGACCCAGAAACTGCCATTGAGTTGTACACTCATATCTCCAAGAGCAGCATCAAACCTCCCTTGCCTTTCCTCAATCGGATTCTCATTATGTTCGTGTCCTGTGGTCTGTTGGAAAATGCACGCCACATGTTTGACAAAATGCGTGTGAGGGACTTCAACTCTTGGGCGACCTTGTTTGTTGCGTACTATGATAATGCTGATTATGAGGAGGCTACGGCTGTTTTTGTCAACATGTTAGGCCACTTGGGTATGTTGCAATTTCCTCCGTGGATATGGGCTTGTCTTCTCAGGGCTTGTGCATGCACTTTGAATGTCCCACTGGGATTACAAGTTCATGGATGGTTGTTGAAGTTGGGTACTTGTGATCATGTACTTCTCAGCAGCTCCATGATAAACTTTTACGGGAGATTCACGTGCCTGGAAGATGCGAGTGCTGTCTTCAATGGGGTGTCGCGGCATAACACGCTGACTTGGACAGCTAAAATCGTTAGTGGTTGCAGGGAAAAACAATTCTCTGAGGTTTTTGGCGACTTCAGGGAGATGGGAATGAGAGGGGTGAAGAAGGACTGCTTCACGTTTTCTAGTGTTCTCAAGGCGTGTGGAAAGATGCTGAATCAGGAACGATTAGGTGAACAAGTCCACGCTGATGCCATCAAACTTGGGCTAGTCTCGGATCACTATGTGCTGTGTAGTTTGATTGCCTTGTATGGAAGATGTGGATTGTTGAGAGAAGCAAAACAAGTGTTTGAGATTATCCGAGACGAGAGAAAGGTTGATTGTTGGAATGCTATGCTTATGGGTTACATACAGAATGGTTTCCACATTGAAGCCGTTAAGTTTCTGTATCAGATGCAGGAAGCTGGAATGCAGCCCCGGGAATCTCTGCTTAAAAAATTAAGAATTGCTTGTGGCAGTATTACCTACACAAACATGAATTAA 1260 0.4524 MVLITAPVPKVPPHHLFLDQNLDLKNNNSRTLPSPSHQLELLPPLRYPIHTFPRPLIPQTTFTKNEMKKKKRKETTTSDILHLMDALPFPISIDIYTSLIKECTDSGDPETAIELYTHISKSSIKPPLPFLNRILIMFVSCGLLENARHMFDKMRVRDFNSWATLFVAYYDNADYEEATAVFVNMLGHLGMLQFPPWIWACLLRACACTLNVPLGLQVHGWLLKLGTCDHVLLSSSMINFYGRFTCLEDASAVFNGVSRHNTLTWTAKIVSGCREKQFSEVFGDFREMGMRGVKKDCFTFSSVLKACGKMLNQERLGEQVHADAIKLGLVSDHYVLCSLIALYGRCGLLREAKQVFEIIRDERKVDCWNAMLMGYIQNGFHIEAVKFLYQMQEAGMQPRESLLKKLRIACGSITYTNMN* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00988 419 Gene3D Tetratricopeptide repeat domain 317 414 IPR011990 GO:0005515
Lapu2g00988 419 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Lapu2g00988 419 NCBIfam pentatricopeptide repeat 367 398 IPR002885 -
Lapu2g00988 419 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Lapu2g00988 419 Gene3D Tetratricopeptide repeat domain 193 316 IPR011990 GO:0005515
Lapu2g00988 419 Gene3D Tetratricopeptide repeat domain 62 192 IPR011990 GO:0005515
Lapu2g00988 419 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 54 412 IPR046960 GO:0003723|GO:0009451
Lapu2g00988 419 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 316 418 - -
Lapu2g00988 419 Pfam PPR repeat 95 117 IPR002885 -
Lapu2g00988 419 Pfam PPR repeat 337 360 IPR002885 -
Lapu2g00988 419 Pfam PPR repeat 367 395 IPR002885 -
Lapu2g00988 419 Pfam PPR repeat 134 158 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00988 Lapu-Chr2 9215634 9217091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00988 288 418 Glycoside Hydrolase AT3G49170 32.836 4.98e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00988 - - gmx:100778405 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00988 2 9215634 9217091 Lapu2g00988 2 9215634 9217091 ECH