Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00979 ATGGCGCTGACTAGGGTTTTCGGTGCGATCGCCGGCAGGGCCTTCATGGCGGCGGCATCGAAGAGCACGGCCAAGGTAAAAGCTGCTCCATCCGGTGGAGCCGCCGCAAAACCCGCGGTGAAGAAGACGGCTATGACCAGAACCAACGCCGGCATACAGAAGGCGGTTCCGGTCTCTTCCGAGCTCGGCAACTTCGTAGGCGCTTCTGAAGTGTCGCGAACTGTCGCGGTTAAGAAAGTGTGGGAGTACATCAAGCTGCAGAATCTTCAGAATCCTTCAAATAAGAAGGAGGTCTTTTGTGATGCGAAGCTGAAGACCATTTTTGGTGGGAAGGATAAGGTTGGGTTCACAGAGATTGCTAGATTGCTGTCTAATCATTTTGTGAAATCAGGCTGA 396 0.5303 MALTRVFGAIAGRAFMAAASKSTAKVKAAPSGGAAAKPAVKKTAMTRTNAGIQKAVPVSSELGNFVGASEVSRTVAVKKVWEYIKLQNLQNPSNKKEVFCDAKLKTIFGGKDKVGFTEIARLLSNHFVKSG* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00979 131 ProSiteProfiles SWIB/MDM2 domain profile. 51 129 IPR003121 -
Lapu2g00979 131 CDD SWIB-MDM2_like 56 127 - -
Lapu2g00979 131 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 24 128 - -
Lapu2g00979 131 Gene3D SWIB/MDM2 domain 46 131 IPR036885 -
Lapu2g00979 131 SUPERFAMILY SWIB/MDM2 domain 45 129 IPR036885 -
Lapu2g00979 131 SMART swib_2 52 131 IPR019835 -
Lapu2g00979 131 Pfam SWIB/MDM2 domain 55 127 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00979 Lapu-Chr2 9122045 9123000 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lapu2g00979 SWIB 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00979 - - gmx:100779127 174.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00979 2 9122045 9123000 Lapu2g00979 2 9122045 9123000 ECH