Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00970 ATGGCGAGTGAATTTGGCGCCAATGGTCCTTCAACACCTCCGTCCAATTCCGCGGAGTCCTTCATTGGCTGCTTCATAAGCTTGATTTCGAAGTGCGAGATTCGCTACGAGGGCGTTCTCTATTTTCTTAACGTCCAGGATTCCACCATCGGCTTGAAGAACGTTAGATCTTATGGAACGGAGGGGAGAAGAAAAGATGGCACACAAGTTCCTCCAAGTGATAAGGTTTATGAATACATTCTTTTCCGAGGAAATGACATTAAGAATTTGCAGATCAAGTCACCCTCCCCTACTTCTAAATCAGAAGAGCAGGTTTTTAGTGATCCAGCTATTATTCAGTCACAACATTCTGGCTCCCCAAGTTCTCCTGTGGCCTCAGTTGGTGGTAGAAATTTGACAGAATCAATTCAAAGGCAAGATACCACTGCTATATCTAGTAAACCCTTTCCTGTTGGGTTACCTTCTTATCAGTCGGTAACTGACCTGGGACCTTCAAATTCATCTGCTGCTACTCAAGGTGCTAGTCATCCATCTTTTTCTTCAGCAATGTATTGGCAAGGGCCTAGTGATATGTCCAGCGGTGGTTCTCATTCTCTGCTACAATCTAGTTCCCTTTACTCCCCATCAACGGCAGCATCCTTAGCTGTGCAGAATCAGATGAAAAATGCAGAAACTCAGTTACCTACAAAAGGGGGATGGACAGGTTTTTCAGAGTGTGGTCTACCTGTATCTTCTGCCATGACTTCTTCTCTTGTTAATCTGATTCATTCACCTTCTCTTACCTCCTTAAAAAATTCTGATTCTCTTGATGTTCCATCCCTTTTGTCTACTAAGATGCATGTGCCATATTCTGCATCCATGACTTCTGATGGATCAAACATGCCTCAGTATTCTTCACCTTTTCAAGACATTTGTTCTGACTCAAGGCCAATTCATCCTCGACATTCTGCTCCTTCATTTGTGGATTCTACTTCAGGTCCCTTGCCAACAGCACCATCTTTGTTAACTCCAGATCAATTTGCAAATCCTAGAGAACAATTATTATCTATTACACATAATTTGAACCCTAATCAGCAGGGTATGGGTTCTCTGTCTCTAACATCCTTTAGTTCATCTGCATTAATGCCTTTTCCAGCTTCTCAGGCACCACTGCTTCCACTACCTACCTCAGTGCAAAAGCCTCAATACACAGCTCCACAATTCACTGAAGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAGAAAGGATGAAGTATGGGGCTCTCTTGGAAAGGCAACCTCAACAATAGAGGGAGTACAGGATAATACTTCTCTCAATATGGGTGTCAGAGAATATCATGGGATGGTACCAAACCATAAGTCAGCATACAAGAAGGATGACTTTTTTGACACAATTTCATGTAACTCCTTGACCCACGGGTCAAGGAACGGACAAAGTCGTTTCTCTGAGAGAATGAAACAGGATACTGAGACATTTGGCAATTTCCAGCAGAGGCATAATTTTAGTTATGGTGCTGGACGGTCTCAGGGTGACTATATCAGGGGCTCATATAATTGGGGAGGAAGGGGTTATGGCTATGGTGGGAGAGGGCGTGGTCCAAACTTTCCTCTCTAG 1617 0.4329 MASEFGANGPSTPPSNSAESFIGCFISLISKCEIRYEGVLYFLNVQDSTIGLKNVRSYGTEGRRKDGTQVPPSDKVYEYILFRGNDIKNLQIKSPSPTSKSEEQVFSDPAIIQSQHSGSPSSPVASVGGRNLTESIQRQDTTAISSKPFPVGLPSYQSVTDLGPSNSSAATQGASHPSFSSAMYWQGPSDMSSGGSHSLLQSSSLYSPSTAASLAVQNQMKNAETQLPTKGGWTGFSECGLPVSSAMTSSLVNLIHSPSLTSLKNSDSLDVPSLLSTKMHVPYSASMTSDGSNMPQYSSPFQDICSDSRPIHPRHSAPSFVDSTSGPLPTAPSLLTPDQFANPREQLLSITHNLNPNQQGMGSLSLTSFSSSALMPFPASQAPLLPLPTSVQKPQYTAPQFTEEFDFEAMNEKFRKDEVWGSLGKATSTIEGVQDNTSLNMGVREYHGMVPNHKSAYKKDDFFDTISCNSLTHGSRNGQSRFSERMKQDTETFGNFQQRHNFSYGAGRSQGDYIRGSYNWGGRGYGYGGRGRGPNFPL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00970 538 Pfam FDF domain 400 495 IPR019050 -
Lapu2g00970 538 Pfam Scd6-like Sm domain 21 94 IPR025609 -
Lapu2g00970 538 SUPERFAMILY Sm-like ribonucleoproteins 20 95 IPR010920 -
Lapu2g00970 538 ProSiteProfiles FFD box profile. 455 470 IPR025761 -
Lapu2g00970 538 PANTHER SCD6 PROTEIN-RELATED 16 533 - -
Lapu2g00970 538 SMART FDF_2 399 497 IPR019050 -
Lapu2g00970 538 ProSiteProfiles TFG box profile. 477 497 IPR025768 -
Lapu2g00970 538 MobiDBLite consensus disorder prediction 155 178 - -
Lapu2g00970 538 ProSiteProfiles Sm domain profile. 13 96 IPR047575 GO:0003723
Lapu2g00970 538 SMART LSM14_2 15 116 IPR025609 -
Lapu2g00970 538 CDD LSm14_N 18 92 IPR025609 -
Lapu2g00970 538 ProSiteProfiles DFDF domain profile. 393 429 IPR025762 -
Lapu2g00970 538 Gene3D - 13 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00970 Lapu-Chr2 8995242 9002716 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00970 K18749 - gmx:102669894 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00970 2 8995242 9002716 Lapu2g00970 2 8995242 9002716 ECH