Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00680 ATGGCTGCTGCAAGGTTAACATCGTGCGTGGCGGTAACATCCGCTGCGGTGCTTTCCATGTCCACGTTCTCCGATCGTGCCTACGCAGACTCTTCCTTCCGATTCCCTTTCTTCTCTTCGTCGCCTTCCAATGCGCCGTCGCCACCGAACCAGTCTTCCGACACTAATTCAGAGTCTCCGGCGCCCGATGAACCTAACAAGTCGGGTTTTGATCCGGAATCGTTAGAAAGAGGAGCCAAAGCTCTCCGTGAAATCAACAGTTCTTCCTACTCTAAGCAGGTGTTTGATTTAATGCGAAAGCAGGAGCAAACTCGCCTCGCTGAATTAGACGCTGAGAAAGTTCACTACGAACTTATTCAGTCTCAAGGGGATATTGAAAGGCAGCGGAAAATGGCTGAAGAGCAACGTAATTTAATACAAGAGCAAGCCCAGAGACAGGCCCAGGTGCTGCGATATGAAGATGAACTGGCAAGGAAAAGAATGCAGTTATCTATAAGTTGCCATTCTCAGACAGATCATGAAGCCCAAAGGCTACATAATGTTGAATTGGTCAAGATGCAAGAGGAGTCTTCTGTAAGAAAGGAGCAGGCAAGACAGGCTACTGAAGAACAGATTCAATCTCAGCAGCGTCAGACTGAGAGAGAGAGAGCTGAAATAGAAAGAGAAACTATTAGAGTTAAGGCAATGGCTGAGGCTGAAGGCCGAGCCCATGAAGCAAAATTGACCGAGGATCATAACAGGAGAATGCTTATAGAACGACTGCAAGGTGAAAGGGATAAATGGCTTGCTGCAATTAACACAACTTTCAGTCATATAGAAGATGATAAGTTGGTATTTACTTTGGAAATGATCTTAGCTGACTTTTTACAATACACAGGTGGTCTAAGGGCCCTATTGACTGATAGGGACAAATTACTTATGACTGTTGGAGGAGCTACTGCACTGGCTGCAGGAGTATATACAACTAGAGAAGGTGCTAAAGTCACCTGGGGCTATATTAATCGAATTTTAGGGCAGCCATCACTGATCCGGGAATCATCGATGGCAAAATTCCCTGGATCAAAGATCATTTCTCAAGCCAAAAATAAACTTATGAACAGTGGTACTTTGGCTGGGACAGAAAAGCCTATTGGGACTAAAAATGGTCTTGGAAATGTAATCCTCCATCCATCGTTGCAGAGAAGAATAGAGCATCTTGCTCGTGCAACATCAAATACCAAAGCCCATCAGGCACCATTTCGTAACATGCTTTTTTATGGCCCTCCAGGCACTGGTAAAACGATGGTTGCAAGGGAAATAGCGAGAAGATCGGGTTTGGATTATGCCATGATGACTGGAGGAGATGTTGCACCTCTGGGCGCGCAGGCTGTCACCAAAATTCATGATATATTTGATTGGGCCAAGAAATCTAGAAAAGGACTATTGCTTTTTATCGATGAGGCAGATGCTTTCCTTTGCGAGCGTAACAGCTCACACATGAGTGAAGCTCAGCGCAGTGCTCTAAACGCATTGCTCTTCAGAACTGGTGATCAGTCTCGAGACATAGTACTTGTCCTTGCGACAAACAGACCAGGTGATCTTGACAGTGCAGTTACTGATCGCATTGATGAAGTGATTGAATTTCCGCTTCCAGGAGAGGAAGAGCGTCTAAAGTTATTGAAACTCTATTTGAACAAATATTTATGTGATGACAATAATGGCTCCAAGGGAGGCTTCTTGCTGAAGAAGCAGCCTCAGAAGATTACTATAGAGGATTTATCTGAAGATGTTTTCAGAGAGGCTGCCAAGAAAACGGAGGGATTTTCTGGCCGTGAGATCGCCAAACTCATGGCTAGCGTTCAAGCTGCTGTCTATGGGCGCCCGGACTGCATCTTGGATTCCCAGTTGTTTAAAGAGATTGTAGATTACAAGGTGGTGGAACATCACCAACGACTAAAACTAGCAGCTGAAGGTGGCCAGCCCGGCCAAATATAA 1974 0.4529 MAAARLTSCVAVTSAAVLSMSTFSDRAYADSSFRFPFFSSSPSNAPSPPNQSSDTNSESPAPDEPNKSGFDPESLERGAKALREINSSSYSKQVFDLMRKQEQTRLAELDAEKVHYELIQSQGDIERQRKMAEEQRNLIQEQAQRQAQVLRYEDELARKRMQLSISCHSQTDHEAQRLHNVELVKMQEESSVRKEQARQATEEQIQSQQRQTERERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERLQGERDKWLAAINTTFSHIEDDKLVFTLEMILADFLQYTGGLRALLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSKIISQAKNKLMNSGTLAGTEKPIGTKNGLGNVILHPSLQRRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARRSGLDYAMMTGGDVAPLGAQAVTKIHDIFDWAKKSRKGLLLFIDEADAFLCERNSSHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLLKLYLNKYLCDDNNGSKGGFLLKKQPQKITIEDLSEDVFREAAKKTEGFSGREIAKLMASVQAAVYGRPDCILDSQLFKEIVDYKVVEHHQRLKLAAEGGQPGQI* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00680 657 MobiDBLite consensus disorder prediction 40 63 - -
Lapu2g00680 657 Pfam ATPase family AAA domain-containing protein 3, N-terminal 53 344 IPR021911 -
Lapu2g00680 657 Pfam ATPase family associated with various cellular activities (AAA) 416 543 IPR003959 GO:0005524|GO:0016887
Lapu2g00680 657 Coils Coil 125 145 - -
Lapu2g00680 657 Gene3D - 361 563 IPR027417 -
Lapu2g00680 657 MobiDBLite consensus disorder prediction 40 73 - -
Lapu2g00680 657 ProSitePatterns AAA-protein family signature. 515 534 IPR003960 GO:0005524|GO:0016887
Lapu2g00680 657 SMART AAA_5 412 545 IPR003593 GO:0016887
Lapu2g00680 657 FunFam ATPase family AAA domain-containing protein 3 370 560 - -
Lapu2g00680 657 PANTHER PUTATIVE ATP-ASE 281 651 - -
Lapu2g00680 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 639 IPR027417 -
Lapu2g00680 657 Coils Coil 191 225 - -
Lapu2g00680 657 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00680 Lapu-Chr2 5979804 5985784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00680 392 619 Miscellaneous Gene Families AT5G53170 29.289 2.71e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00680 K17681 - gmx:100777755 1051.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00680 2 5979804 5985784 Lapu2g00680 2 5979804 5985784 ECH