Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00627 ATGCACTTGAGGTCGTTCTTTTGCGAGGTTATCCTGTTCAACAGGTTAAGCTCGCAAGTGCAAGCTCGTTCCTATGCCCGTCGTCGTGAACCGTTTCTCACAAAAGTTTCTCACTACCTCAACCGTGCCATACTCATTGACTCCATTAGACTCGCTCTACGCTCTAACAAACCCAACTCCTCCCTTTCCTCTCTCATAAACCACCGTCTTTTTGACACTTTCGTGCTCACTCATGCCCTTCGTTCTGCCCCTTCTGCAGATTCTGCTCTTTCCCTTGTCCATGCCCTCGAAAAAAATTCCAGTTTTTCCCACACCCACCACACTCTCCATGCTCTTGCAACTGTGCTTGCCAAGGCTGGTAGATGCTCTGAGCTCAAATCCCTCATTGATGCTATCCGAGCCAATCGATTCGGCTCTATTCGGATCAGCTTCATGAATCTCATGCAGTGGCATGCTGCTGCTAGGGACCTTGACACTGTTCTTCAAGTGTGGGAACAGTATACACTGGAGAGCAACCATCTTTGCGCTGAATCATATAACATTGTTATGGCTCTTTATGTTCAAATGGGAAAGGACTCGGAGGCTGTACAAGTTTTTCAGAGGATGATTGATGAAGGGTCTCTGCCGAATTGCAGAAGCTTCACAGTAATAATAGATCACCTCGTGCAGTCCCGGAAGTTATCAGAAGCATTGGAGGTTTTTAACCTCTTGCCTTTGATGAGGGTCAAACGTACTTTGAAACAGTACTCCGTTCTGCTTGAGGGTTTTGTAGGCAGCAAACGGTTTGATGGAGTGAGAATTTTAGTTGATGAAATGCAGGTTGATGGAATATTGCCTAGTAGAGGCGTGATTTTGTTGCTGCAGCAGATGAAGGAGGAAGGAATTCTTGAAGACAGGGAGCAGTTACTGAGAGGAATTTGGCCAGATGAGAGAATCAGGAGTATAAGTTATTCTATTGATAGTGGTGACGAGGATGATAATGAGAATGAGGGTGAAGATGAGAATATAAATGGTGCTAGTCAATGTGATCCTGTTGATGGAATTCATTTAAAACCGTGGCTGGACCCACGGGCTTTGGCCAGTGCCTTGCGGAATTGGAGTCCTGATGAGGTAGCAGCACTAGAGGGTGCAAACTTTGTGTGGACAACAAGGTTGATTTGCAAGATGCTTAGAAATTTCAAAACACCAGAAGCTGCATGGAGTTTCTTCTGCTGGGTTGCTAATCAAAGTGGATTTACTCATGACATATACACGGTACAAAGAATCATGACCCTTCTAGCACGCCACGGACGTACTGACTTGGTTAATACACTCATCTCCAAGATCAGAATGGAGGGAATGAGATTACCAGTCAGCACCATCAGGCTGATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTATGAAGGTTTTCAATGAGGATCGAATACTTTGCGGTCCCATATCAAATGTTAACCTGATGCTTCTGTATTCCTCTCTTCTAAGAACGTTGACAAAGTGTGGAAGAAACTCTGATGCCTTGGACATGCTTGACGACATGATTTTAAATGGTATTTGCCCAGATATCCAGACATTTTCAGGCCTAATGCTCTACTTCTCTCAGCTTGGGGACATAAAAACCGTGCAAAAGCTCTTTGCAATGGTTAGGCAGAGCGGTCTAGAGCCAGATGCTTATTTGTACAAGGTATTAATCCAAGGTTATTGCAAGTCAAATAGAGCTGCACTAGCATGGAGGCTATTTGAAGACATGAAGAATTCTGGTTTAGTGCCTGACTACGCCACCAAAGAGTTGCTAGTGAAGAGCCTCTGGAAAGAGGGGAGACGAAGAGAGGCTGCAACAGTGGAAGAGAGTTGTGAGGAAATAAATACGGTTCTTCCACTTGCATTGCAGGGTCATGAATGGACTATCAGTTCTGCAGATCTCACTAGACTTTATGATATTTATTCTAACTCTTTTGCTTAA 1971 0.4429 MHLRSFFCEVILFNRLSSQVQARSYARRREPFLTKVSHYLNRAILIDSIRLALRSNKPNSSLSSLINHRLFDTFVLTHALRSAPSADSALSLVHALEKNSSFSHTHHTLHALATVLAKAGRCSELKSLIDAIRANRFGSIRISFMNLMQWHAAARDLDTVLQVWEQYTLESNHLCAESYNIVMALYVQMGKDSEAVQVFQRMIDEGSLPNCRSFTVIIDHLVQSRKLSEALEVFNLLPLMRVKRTLKQYSVLLEGFVGSKRFDGVRILVDEMQVDGILPSRGVILLLQQMKEEGILEDREQLLRGIWPDERIRSISYSIDSGDEDDNENEGEDENINGASQCDPVDGIHLKPWLDPRALASALRNWSPDEVAALEGANFVWTTRLICKMLRNFKTPEAAWSFFCWVANQSGFTHDIYTVQRIMTLLARHGRTDLVNTLISKIRMEGMRLPVSTIRLIIDFYGISKNADAAMKVFNEDRILCGPISNVNLMLLYSSLLRTLTKCGRNSDALDMLDDMILNGICPDIQTFSGLMLYFSQLGDIKTVQKLFAMVRQSGLEPDAYLYKVLIQGYCKSNRAALAWRLFEDMKNSGLVPDYATKELLVKSLWKEGRRREAATVEESCEEINTVLPLALQGHEWTISSADLTRLYDIYSNSFA* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00627 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Lapu2g00627 656 Pfam PPR repeat family 558 605 IPR002885 -
Lapu2g00627 656 Pfam PPR repeat family 178 221 IPR002885 -
Lapu2g00627 656 Gene3D Tetratricopeptide repeat domain 76 316 IPR011990 GO:0005515
Lapu2g00627 656 Gene3D Tetratricopeptide repeat domain 377 484 IPR011990 GO:0005515
Lapu2g00627 656 MobiDBLite consensus disorder prediction 318 341 - -
Lapu2g00627 656 Gene3D Tetratricopeptide repeat domain 488 642 IPR011990 GO:0005515
Lapu2g00627 656 NCBIfam pentatricopeptide repeat 562 594 IPR002885 -
Lapu2g00627 656 NCBIfam pentatricopeptide repeat 178 211 IPR002885 -
Lapu2g00627 656 NCBIfam pentatricopeptide repeat 493 525 IPR002885 -
Lapu2g00627 656 PANTHER OS01G0167750 PROTEIN 1 655 IPR044175 -
Lapu2g00627 656 SUPERFAMILY TPR-like 94 233 IPR011990 GO:0005515
Lapu2g00627 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Lapu2g00627 656 Pfam PPR repeat 493 521 IPR002885 -
Lapu2g00627 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Lapu2g00627 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Lapu2g00627 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00627 178 617 Glycosyltransferase AT1G05670 22.737 4.41e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00627 - - gmx:100779372 1074.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00627 2 5487973 5494640 Lapu2g00627 2 5487973 5494640 ECH