Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00606 ATGACAGGGTCATCGAAAGGAAGTTCCCATGGAAGAATGTTTGGAAAGTTAAAGAAAGAAGAATTTGATGGTTATAACTCTGATAACCATCCAAGAAAAAATAGCCCCGTCACGTTGGAAGCACCTCATTTGGATCCTCAGATGGCAACAGATAATGATCCTTATGACCCTTCCCTTTCTCCCTTATCCAAATCCCCATGGTCCTCTCACATGAATGAAGACATTTTGATGTCCAAAGACAACGAGGCTCTTGTGGGGTCTTTAGTCCGAGAAGAGGGTCACATTTACTCCCTCGCTGCAACCAAGGACTTGTTATACACGGGTTCAGACAGTAAAAATATTCGCGTGTGGAAGAACCAACAGGAGTTCACGGGTTTCAAATCCAACAGTGGGTTAGTGAAAGCGATTGTGATTGCGGGGGAAAAAATCCTCACAGGACACCAAGATGGAAGGATAAGAGTGTGGAGAGTTTCTGGAAAAAATGAGCAACAACACAAGCGTGTGGCAACATTGCCAACCTTAAGAAACTACATTAAATGTTCGGTGAAACCAAGTAATTACGTGGAAGTGAAACGACACCGTAATGTGTTGTGGATCAAACACTACGACGCTATTTCATGTCTAGGCTTAACAGAAGATCATAGTTATATATATTCTGCATCGTGGGATAAAACTTTCAAAGTGTGGCGAACGTCAAATTTTAAGTGTCTAGAGTCTGTGGCAGCACATGACGATGCTGTTAACGCGCTTATTGTGGGGTTGGAAGACTTAGTTTTCACAGGCTCAGCTGATGGCACGGTAAAGATCTGGCGACGGGAGATTCAGGGGAAAGGAACAAAACATTTTTTCTCGCACACATTGTTGAAGCAAGAGTGTGCGGTGACGGCATTAGTGATGAGCGGAGAGGGGAATTTTTTATACGCTGGATCTTCCGATGGGTTGGTGAATTATTGGGTGAGAGAGACAAATTTGGAGCACAGGGGCATATTAAGGGGACACAAGTTGGCAGTGTTGTGTTTGGCTGCAGCAGGAAGTTTGGTGTTCAGTGGGTCTGCTGACATGTCCATATGCGTATGGAAGAGGTCATTGAATGAGGAGCACACACGCCTTAATGTTTTGACTGGCCATAATGGCCCAGTTAAGTGTCTGGCGGCGGAGAGGGATCTCGACGCCATGTGCAACGAGCGACGGTGGATTTTGTACAGTGGTAGTTTGGATAAGTCAGTGAAGGTGTGGAAGGTCTCTGAGAGTGCAACTGCACAAAACAACCACCAACCACCGCCGAGGCTTAGTGTTGATCCCTTCCCCAGACTCTCATCATTGAGGAATCTGGGGTCCAAGAGATTCTAG 1350 0.4563 MTGSSKGSSHGRMFGKLKKEEFDGYNSDNHPRKNSPVTLEAPHLDPQMATDNDPYDPSLSPLSKSPWSSHMNEDILMSKDNEALVGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNQQEFTGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWRVSGKNEQQHKRVATLPTLRNYIKCSVKPSNYVEVKRHRNVLWIKHYDAISCLGLTEDHSYIYSASWDKTFKVWRTSNFKCLESVAAHDDAVNALIVGLEDLVFTGSADGTVKIWRREIQGKGTKHFFSHTLLKQECAVTALVMSGEGNFLYAGSSDGLVNYWVRETNLEHRGILRGHKLAVLCLAAAGSLVFSGSADMSICVWKRSLNEEHTRLNVLTGHNGPVKCLAAERDLDAMCNERRWILYSGSLDKSVKVWKVSESATAQNNHQPPPRLSVDPFPRLSSLRNLGSKRF* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00606 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Lapu2g00606 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 287 318 IPR001680 GO:0005515
Lapu2g00606 449 SMART WD40_4 192 230 IPR001680 GO:0005515
Lapu2g00606 449 SMART WD40_4 275 319 IPR001680 GO:0005515
Lapu2g00606 449 SMART WD40_4 323 360 IPR001680 GO:0005515
Lapu2g00606 449 SMART WD40_4 366 413 IPR001680 GO:0005515
Lapu2g00606 449 SMART WD40_4 119 156 IPR001680 GO:0005515
Lapu2g00606 449 SMART WD40_4 233 271 IPR001680 GO:0005515
Lapu2g00606 449 SMART WD40_4 81 118 IPR001680 GO:0005515
Lapu2g00606 449 MobiDBLite consensus disorder prediction 1 66 - -
Lapu2g00606 449 PRINTS G protein beta WD-40 repeat signature 400 414 IPR020472 -
Lapu2g00606 449 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Lapu2g00606 449 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Lapu2g00606 449 FunFam BnaA09g28200D protein 188 275 - -
Lapu2g00606 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 270 IPR001680 GO:0005515
Lapu2g00606 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 422 IPR001680 GO:0005515
Lapu2g00606 449 Pfam WD domain, G-beta repeat 370 413 IPR001680 GO:0005515
Lapu2g00606 449 Pfam WD domain, G-beta repeat 235 270 IPR001680 GO:0005515
Lapu2g00606 449 Pfam WD domain, G-beta repeat 328 360 IPR001680 GO:0005515
Lapu2g00606 449 Pfam WD domain, G-beta repeat 201 229 IPR001680 GO:0005515
Lapu2g00606 449 Pfam WD domain, G-beta repeat 92 118 IPR001680 GO:0005515
Lapu2g00606 449 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 42 418 IPR045182 -
Lapu2g00606 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 360 IPR001680 GO:0005515
Lapu2g00606 449 CDD WD40 92 413 - -
Lapu2g00606 449 Gene3D - 58 183 IPR015943 GO:0005515
Lapu2g00606 449 MobiDBLite consensus disorder prediction 13 28 - -
Lapu2g00606 449 SUPERFAMILY WD40 repeat-like 88 421 IPR036322 GO:0005515
Lapu2g00606 449 Gene3D - 184 430 IPR015943 GO:0005515
Lapu2g00606 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00606 Lapu-Chr2 5279481 5280870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00606 198 414 Miscellaneous Gene Families AT5G08390 24.324 1.40e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00606 - - gmx:100819990 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00606 2 5279481 5280870 Lapu2g00606 2 5279481 5280870 ECH