Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00347 ATGAGAAGTCCGAAGGCAGAGTCCGAAGAGAGGGACGTGAGCATAGCAAGAGGTGATGGAGAAGATGAATTTTGTTCTGGTTTTCAGGGATTGAAGTTTGACAGTGGAAGTGGTAGCGGTAAGAAAAAAAAGAGTTTTCATCCTCCGATTGAAACGCATTGGGATCTGCATTCATCCACGTCTGGGAAAAAGTCTAATTCGTTCCCTGTCAAGTCACTCTTGTCATACCCGTTCATGAAATTTAGGAAGAGTAAAAGCCTTGTAATACTTCTAGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTGGAGTCTTTTCGCGAAATGCTTTTACAAGACGGTCTCTTGCCACCTAAGCACGATGATTATCACACTCTTCTCAGAGTTAGCTTTCTAACTGCACATCTTTTCATTGATGCAAGGTTTCTTCGCATGAGGGATTTCGACATGTCAAAATCCAAAGAAATGTTTCAAAATTATCTCAATTGGCGCAACGAATTTCAAGTAGACCAGCTTCCAAAGGAATTCAATTTCACGGAGTACAATGAAGTGAAGAAATGCTATCCTCACGGATACCACGGAGTTGATAGATTGGGAAGACCCTTGTATATTGAGAGAATTGGGATGGTGGACCTTAACAAACTGGGGCAAGTTACTACATTTGAAAGGTTTATCAAACATCATGTGACAGAGCAAGAAAAAACTCTCAAACTAAGATACCCTGCGTGTTCTCTAGCAGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATGTCTAATTTCTCAAAGCCCGCAAGGTACCTCTTTACGGAAATTCAGAAGATCGATAGCTGTTACTATCCTGAGACTCTAAATAAGCTATTTATTATTAACGCCGGATCTGGGTTTAGGATGTTGTGGAAAGCAGTAAAGACATTCCTAGATGTACGCACAGTAGCAAAAATTCAGGTGTTGGGCTCTAATTATCTTAGTGTGCTGCTTGAGGCTATCGAGCCGAGTAATTTGCCAACATTTCTGGGTGGTAATTGCACGTGTTCCGATTATGGAGGTTGTCTGATGAGTGATCGAGGCCCCTGGAAAAATCCAGAAGTGTTGGAAATGATTCAGGTTGTTAACTTGAGAGAAGAGATTGGTGGCAAATGCGAAGATGCTGAGGTGGCTACAGAAGATTCCTCGATGCCTAAAAGGGTTGACATGCAAACCAAAGATGACGATAATGCTCTGAGTCCACTTGAGGAGACAGCGTGTGCGGGGTCAGACTCTGCATGTACTTGTAGGTTAGCAATGCAAAAAATTGATTCTCTTGAAGCTAGTCTTGGAGACATAAAGGATAAAATCAAGACTCTGGAAGATGTACTTCAAGACACCAAGATGGCATTGAAAGAACACGCACAGCATTCGGAACAGTCAAAAGTATAG 1440 0.4194 MRSPKAESEERDVSIARGDGEDEFCSGFQGLKFDSGSGSGKKKKSFHPPIETHWDLHSSTSGKKSNSFPVKSLLSYPFMKFRKSKSLVILLEGARDPKDKQIVESFREMLLQDGLLPPKHDDYHTLLRVSFLTAHLFIDARFLRMRDFDMSKSKEMFQNYLNWRNEFQVDQLPKEFNFTEYNEVKKCYPHGYHGVDRLGRPLYIERIGMVDLNKLGQVTTFERFIKHHVTEQEKTLKLRYPACSLAAKRHIASTTSILDVNGVGMSNFSKPARYLFTEIQKIDSCYYPETLNKLFIINAGSGFRMLWKAVKTFLDVRTVAKIQVLGSNYLSVLLEAIEPSNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEMIQVVNLREEIGGKCEDAEVATEDSSMPKRVDMQTKDDDNALSPLEETACAGSDSACTCRLAMQKIDSLEASLGDIKDKIKTLEDVLQDTKMALKEHAQHSEQSKV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00347 479 Coils Coil 439 459 - -
Lapu2g00347 479 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 180 354 IPR001251 -
Lapu2g00347 479 CDD SEC14 178 349 IPR001251 -
Lapu2g00347 479 MobiDBLite consensus disorder prediction 1 19 - -
Lapu2g00347 479 SMART sec14_4 180 351 IPR001251 -
Lapu2g00347 479 MobiDBLite consensus disorder prediction 1 24 - -
Lapu2g00347 479 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 62 473 - -
Lapu2g00347 479 SUPERFAMILY CRAL/TRIO domain 180 375 IPR036865 -
Lapu2g00347 479 Gene3D - 168 379 IPR036865 -
Lapu2g00347 479 SUPERFAMILY CRAL/TRIO N-terminal domain 93 175 IPR036273 -
Lapu2g00347 479 Gene3D - 90 167 - -
Lapu2g00347 479 PRINTS Cellular retinaldehyde-binding protein signature 340 349 - -
Lapu2g00347 479 PRINTS Cellular retinaldehyde-binding protein signature 138 160 - -
Lapu2g00347 479 PRINTS Cellular retinaldehyde-binding protein signature 307 326 - -
Lapu2g00347 479 Pfam CRAL/TRIO domain 188 348 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00347 Lapu-Chr2 2879220 2885182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00347 140 345 Acyl Lipid Metabolism Gene Families AT5G47730 29.327 3.29e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00347 K26544 - gmx:100797170 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00347 2 2879220 2885182 Lapu2g00347 2 2879220 2885182 ECH